Merge remote-tracking branch 'origin/master'

.gitignore

@@ -35,3 +35,5 @@ ocr_demo
 
 /app/common/__init__.py
 /magic_pdf/config/__init__.py
+source.dev.env
+

README_zh-CN_v2.md

@@ -21,7 +21,6 @@
 
 <!-- hot link -->
 <p align="center">
-<a href="https://github.com/opendatalab/MinerU">MinerU: 端到端的PDF解析工具（基于PDF-Extract-Kit）支持PDF转Markdown</a>🚀🚀🚀<br>
 <a href="https://github.com/opendatalab/PDF-Extract-Kit">PDF-Extract-Kit: 高质量PDF解析工具箱</a>🔥🔥🔥
 </p>
 
@@ -82,7 +81,9 @@
 # MinerU
 ## 项目简介
 MinerU是一款将PDF转化为机器可读格式的工具（如markdown、json），可以很方便地抽取为任意格式。
-MinerU诞生于[书生-浦语](https://github.com/InternLM/InternLM)的预训练过程中，我们将会集中精力解决科技文献中的符号转化问题，以此在大模型时代为科技发展做出一点贡献。
+MinerU诞生于[书生-浦语](https://github.com/InternLM/InternLM)的预训练过程中，我们将会集中精力解决科技文献中的符号转化问题，希望在大模型时代为科技发展做出贡献。
+
+https://github.com/user-attachments/assets/4bea02c9-6d54-4cd6-97ed-dff14340982c
 
 ## 主要功能
 
@@ -190,7 +191,24 @@ pip install magic-pdf[full]==0.6.2b1 detectron2 --extra-index-url https://wheels
 
 ### 命令行
 
-TODO
+```bash
+magic-pdf -p {some_pdf} -o {some_output_dir}
+```
+
+运行完命令后输出的结果会保存在`{some_output_dir}`目录下, 输出的文件列表如下
+
+```text
+├── some_pdf.md                 # markdown 文件
+├── images                      # 存放图片目录
+├── layout.pdf                  # layout 绘图
+├── middle.json                 # minerU 中间处理结果
+├── model.json                  # 模型推理结果
+├── origin.pdf                  # 原 pdf 文件
+└── spans.pdf                   # 最小粒度的bbox位置信息绘图
+```
+
+更多有关输出文件的信息，请参考[输出文件说明](docs/output_file_zh_cn.md)
+
 
 ### API
 
@@ -266,6 +284,7 @@ The project currently leverages PyMuPDF to deliver advanced functionalities; how
 
 # Acknowledgments
 
+- [StructEqTable](https://github.com/UniModal4Reasoning/StructEqTable-Deploy) 🔥🔥🔥
 - [PaddleOCR](https://github.com/PaddlePaddle/PaddleOCR)
 - [PyMuPDF](https://github.com/pymupdf/PyMuPDF)
 - [fast-langdetect](https://github.com/LlmKira/fast-langdetect)

docs/FAQ_zh_cn.md

@@ -50,20 +50,7 @@ pip install paddlepaddle==3.0.0b1
 可能是由于模型文件未下载完整导致，可尝试重现下载模型文件后再试  
 参考：https://github.com/opendatalab/MinerU/issues/143
 
-### 7.程序运行完成后，找不到tmp目录
-
-程序输出目录是在"magic-pdf.json"中通过
-```json
-{
-  "temp-output-dir": "/tmp"
-}
-```
-进行配置的。  
-如果没有更改这个参数，使用默认的配置执行程序，在linux/macOS会在绝对路径"/tmp"下创建一个"magic-pdf"文件夹作为输出路径。
-而在windows下，默认的输出路径与执行命令时，命令行所在的盘符相关，如果命令行在C盘，则默认输出路径为"C://tmp/magic-pdf"。  
-参考：https://github.com/opendatalab/MinerU/issues/149
-
-### 8.模型文件应该下载到哪里/models-dir的配置应该怎么填
+### 7.模型文件应该下载到哪里/models-dir的配置应该怎么填
 
 模型文件的路径输入是在"magic-pdf.json"中通过
 ```json
@@ -75,14 +62,14 @@ pip install paddlepaddle==3.0.0b1
 这个路径是绝对路径而不是相对路径，绝对路径的获取可在models目录中通过命令 "pwd" 获取。  
 参考：https://github.com/opendatalab/MinerU/issues/155#issuecomment-2230216874
 
-### 9.命令行中 --model "model_json_path" 指的是什么？
+### 8.命令行中 --model "model_json_path" 指的是什么？
 
 model_json 指的是通过模型分析后生成的一种有特定格式的json文件。  
 如果使用 https://github.com/opendatalab/PDF-Extract-Kit 项目生成，该文件一般在项目的output目录下。  
 如果使用 MinerU 的命令行调用内置的模型分析，该文件一般在输出路径"/tmp/magic-pdf/pdf-name"下。  
 参考：https://github.com/opendatalab/MinerU/issues/128
 
-### 10.Linux下报错：Required dependency not installed, please install by "pip install magic-pdf[full-cpu] detectron2 --extra-index-url https://myhloli.github.io/wheels/"
+### 9.Linux下报错：Required dependency not installed, please install by "pip install magic-pdf[full-cpu] detectron2 --extra-index-url https://myhloli.github.io/wheels/"
 
 这种情况可以先使用pip list 检查一下自己的依赖库列表，重点确认下以下几个库有没有安装（版本不一定完全一致，有就可以）
 ```bash

docs/how_to_download_models_en.md

@@ -35,7 +35,7 @@ model_dir = snapshot_download('wanderkid/PDF-Extract-Kit')
 Alternatively, you can use Git to clone the model repository from ModelScope:
 
 ```bash
-git clone https://www.modelscope.cn/wanderkid/PDF-Extract-Kit.git
+git lfs clone https://www.modelscope.cn/wanderkid/PDF-Extract-Kit.git
 ```
 
 
@@ -57,4 +57,4 @@ Put [model files]() here:
 │       ├── tokenizer_config.json
 │       └── tokenizer.json
 └── README.md
-```
+```
\ No newline at end of file

magic-pdf.template.json

@@ -3,7 +3,6 @@
         "bucket-name-1":["ak", "sk", "endpoint"],
         "bucket-name-2":["ak", "sk", "endpoint"]
     },
-    "temp-output-dir":"/tmp",
     "models-dir":"/tmp/models",
     "device-mode":"cpu"
 }
\ No newline at end of file

magic_pdf/libs/config_reader.py

@@ -57,16 +57,6 @@ def get_bucket_name(path):
     return bucket
 
 
-def get_local_dir():
-    config = read_config()
-    local_dir = config.get("temp-output-dir")
-    if local_dir is None:
-        logger.warning(f"'temp-output-dir' not found in {CONFIG_FILE_NAME}, use '/tmp' as default")
-        return "/tmp"
-    else:
-        return local_dir
-
-
 def get_local_models_dir():
     config = read_config()
     models_dir = config.get("models-dir")

magic_pdf/rw/AbsReaderWriter.py

@@ -2,33 +2,16 @@ from abc import ABC, abstractmethod
 
 
 class AbsReaderWriter(ABC):
-    """
-    同时支持二进制和文本读写的抽象类
-    """
     MODE_TXT = "text"
     MODE_BIN = "binary"
-
-    def __init__(self, parent_path):
-        # 初始化代码可以在这里添加，如果需要的话
-        self.parent_path = parent_path # 对于本地目录是父目录，对于s3是会写到这个path下。
-
     @abstractmethod
     def read(self, path: str, mode=MODE_TXT):
-        """
-        无论对于本地还是s3的路径，检查如果path是绝对路径，那么就不再 拼接parent_path, 如果是相对路径就拼接parent_path
-        """
         raise NotImplementedError
 
     @abstractmethod
     def write(self, content: str, path: str, mode=MODE_TXT):
-        """
-        无论对于本地还是s3的路径，检查如果path是绝对路径，那么就不再 拼接parent_path, 如果是相对路径就拼接parent_path
-        """
         raise NotImplementedError
 
     @abstractmethod
-    def read_jsonl(self, path: str, byte_start=0, byte_end=None, encoding='utf-8'):
-        """
-        无论对于本地还是s3的路径，检查如果path是绝对路径，那么就不再 拼接parent_path, 如果是相对路径就拼接parent_path
-        """
+    def read_offset(self, path: str, offset=0, limit=None) -> bytes:
         raise NotImplementedError

magic_pdf/rw/DiskReaderWriter.py

@@ -3,34 +3,29 @@ from magic_pdf.rw.AbsReaderWriter import AbsReaderWriter
 from loguru import logger
 
 
-MODE_TXT = "text"
-MODE_BIN = "binary"
-
-
 class DiskReaderWriter(AbsReaderWriter):
-
     def __init__(self, parent_path, encoding="utf-8"):
         self.path = parent_path
         self.encoding = encoding
 
-    def read(self, path, mode=MODE_TXT):
+    def read(self, path, mode=AbsReaderWriter.MODE_TXT):
         if os.path.isabs(path):
             abspath = path
         else:
             abspath = os.path.join(self.path, path)
         if not os.path.exists(abspath):
-            logger.error(f"文件 {abspath} 不存在")
-            raise Exception(f"文件 {abspath} 不存在")
-        if mode == MODE_TXT:
+            logger.error(f"file {abspath} not exists")
+            raise Exception(f"file {abspath} no exists")
+        if mode == AbsReaderWriter.MODE_TXT:
             with open(abspath, "r", encoding=self.encoding) as f:
                 return f.read()
-        elif mode == MODE_BIN:
+        elif mode == AbsReaderWriter.MODE_BIN:
             with open(abspath, "rb") as f:
                 return f.read()
         else:
             raise ValueError("Invalid mode. Use 'text' or 'binary'.")
 
-    def write(self, content, path, mode=MODE_TXT):
+    def write(self, content, path, mode=AbsReaderWriter.MODE_TXT):
         if os.path.isabs(path):
             abspath = path
         else:
@@ -38,29 +33,42 @@ class DiskReaderWriter(AbsReaderWriter):
         directory_path = os.path.dirname(abspath)
         if not os.path.exists(directory_path):
             os.makedirs(directory_path)
-        if mode == MODE_TXT:
+        if mode == AbsReaderWriter.MODE_TXT:
             with open(abspath, "w", encoding=self.encoding, errors="replace") as f:
                 f.write(content)
 
-        elif mode == MODE_BIN:
+        elif mode == AbsReaderWriter.MODE_BIN:
             with open(abspath, "wb") as f:
                 f.write(content)
         else:
             raise ValueError("Invalid mode. Use 'text' or 'binary'.")
 
-    def read_jsonl(self, path: str, byte_start=0, byte_end=None, encoding="utf-8"):
-        return self.read(path)
+    def read_offset(self, path: str, offset=0, limit=None):
+        abspath = path
+        if not os.path.isabs(path):
+            abspath = os.path.join(self.path, path)
+        with open(abspath, "rb") as f:
+            f.seek(offset)
+            return f.read(limit)
 
 
-# 使用示例
 if __name__ == "__main__":
-    file_path = "io/test/example.txt"
-    drw = DiskReaderWriter("D:\projects\papayfork\Magic-PDF\magic_pdf")
+    if 0:
+        file_path = "io/test/example.txt"
+        drw = DiskReaderWriter("D:\projects\papayfork\Magic-PDF\magic_pdf")
+
+        # 写入内容到文件
+        drw.write(b"Hello, World!", path="io/test/example.txt", mode="binary")
+
+        # 从文件读取内容
+        content = drw.read(path=file_path)
+        if content:
+            logger.info(f"从 {file_path} 读取的内容: {content}")
+    if 1:
+        drw = DiskReaderWriter("/opt/data/pdf/resources/test/io/")
+        content_bin = drw.read_offset("1.txt")
+        assert content_bin == b"ABCD!"
 
-    # 写入内容到文件
-    drw.write(b"Hello, World!", path="io/test/example.txt", mode="binary")
+        content_bin = drw.read_offset("1.txt", offset=1, limit=2)
+        assert content_bin == b"BC"
 
-    # 从文件读取内容
-    content = drw.read(path=file_path)
-    if content:
-        logger.info(f"从 {file_path} 读取的内容: {content}")

magic_pdf/rw/S3ReaderWriter.py

@@ -2,16 +2,18 @@ from magic_pdf.rw.AbsReaderWriter import AbsReaderWriter
 from magic_pdf.libs.commons import parse_aws_param, parse_bucket_key, join_path
 import boto3
 from loguru import logger
-from boto3.s3.transfer import TransferConfig
 from botocore.config import Config
-import os
-
-MODE_TXT = "text"
-MODE_BIN = "binary"
 
 
 class S3ReaderWriter(AbsReaderWriter):
-    def __init__(self, ak: str, sk: str, endpoint_url: str, addressing_style: str = 'auto', parent_path: str = ''):
+    def __init__(
+        self,
+        ak: str,
+        sk: str,
+        endpoint_url: str,
+        addressing_style: str = "auto",
+        parent_path: str = "",
+    ):
         self.client = self._get_client(ak, sk, endpoint_url, addressing_style)
         self.path = parent_path
 
@@ -21,12 +23,14 @@ class S3ReaderWriter(AbsReaderWriter):
             aws_access_key_id=ak,
             aws_secret_access_key=sk,
             endpoint_url=endpoint_url,
-            config=Config(s3={"addressing_style": addressing_style},
-                          retries={'max_attempts': 5, 'mode': 'standard'}),
+            config=Config(
+                s3={"addressing_style": addressing_style},
+                retries={"max_attempts": 5, "mode": "standard"},
+            ),
         )
         return s3_client
 
-    def read(self, s3_relative_path, mode=MODE_TXT, encoding="utf-8"):
+    def read(self, s3_relative_path, mode=AbsReaderWriter.MODE_TXT, encoding="utf-8"):
         if s3_relative_path.startswith("s3://"):
             s3_path = s3_relative_path
         else:
@@ -34,22 +38,22 @@ class S3ReaderWriter(AbsReaderWriter):
         bucket_name, key = parse_bucket_key(s3_path)
         res = self.client.get_object(Bucket=bucket_name, Key=key)
         body = res["Body"].read()
-        if mode == MODE_TXT:
+        if mode == AbsReaderWriter.MODE_TXT:
             data = body.decode(encoding)  # Decode bytes to text
-        elif mode == MODE_BIN:
+        elif mode == AbsReaderWriter.MODE_BIN:
             data = body
         else:
             raise ValueError("Invalid mode. Use 'text' or 'binary'.")
         return data
 
-    def write(self, content, s3_relative_path, mode=MODE_TXT, encoding="utf-8"):
+    def write(self, content, s3_relative_path, mode=AbsReaderWriter.MODE_TXT, encoding="utf-8"):
         if s3_relative_path.startswith("s3://"):
             s3_path = s3_relative_path
         else:
             s3_path = join_path(self.path, s3_relative_path)
-        if mode == MODE_TXT:
+        if mode == AbsReaderWriter.MODE_TXT:
             body = content.encode(encoding)  # Encode text data as bytes
-        elif mode == MODE_BIN:
+        elif mode == AbsReaderWriter.MODE_BIN:
             body = content
         else:
             raise ValueError("Invalid mode. Use 'text' or 'binary'.")
@@ -57,51 +61,82 @@ class S3ReaderWriter(AbsReaderWriter):
         self.client.put_object(Body=body, Bucket=bucket_name, Key=key)
         logger.info(f"内容已写入 {s3_path} ")
 
-    def read_jsonl(self, path: str, byte_start=0, byte_end=None, mode=MODE_TXT, encoding='utf-8'):
+    def read_offset(self, path: str, offset=0, limit=None) -> bytes:
         if path.startswith("s3://"):
             s3_path = path
         else:
             s3_path = join_path(self.path, path)
         bucket_name, key = parse_bucket_key(s3_path)
 
-        range_header = f'bytes={byte_start}-{byte_end}' if byte_end else f'bytes={byte_start}-'
+        range_header = (
+            f"bytes={offset}-{offset+limit-1}" if limit else f"bytes={offset}-"
+        )
         res = self.client.get_object(Bucket=bucket_name, Key=key, Range=range_header)
-        body = res["Body"].read()
-        if mode == MODE_TXT:
-            data = body.decode(encoding)  # Decode bytes to text
-        elif mode == MODE_BIN:
-            data = body
-        else:
-            raise ValueError("Invalid mode. Use 'text' or 'binary'.")
-        return data
+        return res["Body"].read()
 
 
 if __name__ == "__main__":
-    # Config the connection info
-    ak = ""
-    sk = ""
-    endpoint_url = ""
-    addressing_style = "auto"
-    bucket_name = ""
-    # Create an S3ReaderWriter object
-    s3_reader_writer = S3ReaderWriter(ak, sk, endpoint_url, addressing_style, "s3://bucket_name/")
+    if 0:
+        # Config the connection info
+        ak = ""
+        sk = ""
+        endpoint_url = ""
+        addressing_style = "auto"
+        bucket_name = ""
+        # Create an S3ReaderWriter object
+        s3_reader_writer = S3ReaderWriter(
+            ak, sk, endpoint_url, addressing_style, "s3://bucket_name/"
+        )
 
-    # Write text data to S3
-    text_data = "This is some text data"
-    s3_reader_writer.write(data=text_data, s3_relative_path=f"s3://{bucket_name}/ebook/test/test.json", mode=MODE_TXT)
+        # Write text data to S3
+        text_data = "This is some text data"
+        s3_reader_writer.write(
+            text_data,
+            s3_relative_path=f"s3://{bucket_name}/ebook/test/test.json",
+            mode=AbsReaderWriter.MODE_TXT,
+        )
+
+        # Read text data from S3
+        text_data_read = s3_reader_writer.read(
+            s3_relative_path=f"s3://{bucket_name}/ebook/test/test.json", mode=AbsReaderWriter.MODE_TXT
+        )
+        logger.info(f"Read text data from S3: {text_data_read}")
+        # Write binary data to S3
+        binary_data = b"This is some binary data"
+        s3_reader_writer.write(
+            text_data,
+            s3_relative_path=f"s3://{bucket_name}/ebook/test/test.json",
+            mode=AbsReaderWriter.MODE_BIN,
+        )
 
-    # Read text data from S3
-    text_data_read = s3_reader_writer.read(s3_relative_path=f"s3://{bucket_name}/ebook/test/test.json", mode=MODE_TXT)
-    logger.info(f"Read text data from S3: {text_data_read}")
-    # Write binary data to S3
-    binary_data = b"This is some binary data"
-    s3_reader_writer.write(data=text_data, s3_relative_path=f"s3://{bucket_name}/ebook/test/test.json", mode=MODE_BIN)
+        # Read binary data from S3
+        binary_data_read = s3_reader_writer.read(
+            s3_relative_path=f"s3://{bucket_name}/ebook/test/test.json", mode=AbsReaderWriter.MODE_BIN
+        )
+        logger.info(f"Read binary data from S3: {binary_data_read}")
+
+        # Range Read text data from S3
+        binary_data_read = s3_reader_writer.read_offset(
+            path=f"s3://{bucket_name}/ebook/test/test.json", offset=0, limit=10
+        )
+        logger.info(f"Read binary data from S3: {binary_data_read}")
+    if 1:
+        import os
+        import json
 
-    # Read binary data from S3
-    binary_data_read = s3_reader_writer.read(s3_relative_path=f"s3://{bucket_name}/ebook/test/test.json", mode=MODE_BIN)
-    logger.info(f"Read binary data from S3: {binary_data_read}")
+        ak = os.getenv("AK", "")
+        sk = os.getenv("SK", "")
+        endpoint_url = os.getenv("ENDPOINT", "")
+        bucket = os.getenv("S3_BUCKET", "")
+        prefix = os.getenv("S3_PREFIX", "")
+        key_basename = os.getenv("S3_KEY_BASENAME", "")
+        s3_reader_writer = S3ReaderWriter(
+            ak, sk, endpoint_url, "auto", f"s3://{bucket}/{prefix}"
+        )
+        content_bin = s3_reader_writer.read_offset(key_basename)
+        assert content_bin[:10] == b'{"track_id'
+        assert content_bin[-10:] == b'r":null}}\n'
 
-    # Range Read text data from S3
-    binary_data_read = s3_reader_writer.read_jsonl(path=f"s3://{bucket_name}/ebook/test/test.json",
-                                                   byte_start=0, byte_end=10, mode=MODE_BIN)
-    logger.info(f"Read binary data from S3: {binary_data_read}")
+        content_bin = s3_reader_writer.read_offset(key_basename, offset=424, limit=426)
+        jso = json.dumps(content_bin.decode("utf-8"))
+        print(jso)

magic_pdf/tools/cli.py

+import os
+import click
+from loguru import logger
+from pathlib import Path
+from magic_pdf.rw.DiskReaderWriter import DiskReaderWriter
+from magic_pdf.rw.AbsReaderWriter import AbsReaderWriter
+import magic_pdf.model as model_config
+from magic_pdf.tools.common import parse_pdf_methods, do_parse
+
+
+@click.command()
+@click.option(
+    "-p",
+    "--path",
+    "path",
+    type=click.Path(exists=True),
+    required=True,
+    help="local pdf filepath or directory",
+)
+@click.option(
+    "-o",
+    "--output-dir",
+    "output_dir",
+    type=str,
+    help="output local directory",
+    default="",
+)
+@click.option(
+    "-m",
+    "--method",
+    "method",
+    type=parse_pdf_methods,
+    help="""the method for parsing pdf. 
+ocr: using ocr technique to extract information from pdf.
+txt: suitable for the text-based pdf only and outperform ocr. 
+auto: automatically choose the best method for parsing pdf from ocr and txt""",
+    default="auto",
+)
+def cli(path, output_dir, method):
+    model_config.__use_inside_model__ = True
+    model_config.__model_mode__ = "full"
+    if output_dir == "":
+        if os.path.isdir(path):
+            output_dir = os.path.join(path, "output")
+        else:
+            output_dir = os.path.join(os.path.dirname(path), "output")
+
+    def read_fn(path):
+        disk_rw = DiskReaderWriter(os.path.dirname(path))
+        return disk_rw.read(os.path.basename(path), AbsReaderWriter.MODE_BIN)
+
+    def parse_doc(doc_path: str):
+        try:
+            file_name = str(Path(doc_path).stem)
+            pdf_data = read_fn(doc_path)
+            do_parse(
+                output_dir,
+                file_name,
+                pdf_data,
+                [],
+                method,
+            )
+
+        except Exception as e:
+            logger.exception(e)
+
+    if os.path.isdir(path):
+        for doc_path in Path(path).glob("*.pdf"):
+            parse_doc(doc_path)
+    else:
+        parse_doc(path)
+
+
+if __name__ == "__main__":
+    cli()

magic_pdf/tools/cli_dev.py

+import os
+import json as json_parse
+import click
+from pathlib import Path
+from magic_pdf.libs.path_utils import (
+    parse_s3path,
+    parse_s3_range_params,
+    remove_non_official_s3_args,
+)
+from magic_pdf.libs.config_reader import (
+    get_s3_config,
+)
+from magic_pdf.rw.S3ReaderWriter import S3ReaderWriter
+from magic_pdf.rw.DiskReaderWriter import DiskReaderWriter
+from magic_pdf.rw.AbsReaderWriter import AbsReaderWriter
+import magic_pdf.model as model_config
+from magic_pdf.tools.common import parse_pdf_methods, do_parse
+
+
+def read_s3_path(s3path):
+    bucket, key = parse_s3path(s3path)
+
+    s3_ak, s3_sk, s3_endpoint = get_s3_config(bucket)
+    s3_rw = S3ReaderWriter(
+        s3_ak, s3_sk, s3_endpoint, "auto", remove_non_official_s3_args(s3path)
+    )
+    may_range_params = parse_s3_range_params(s3path)
+    if may_range_params is None or 2 != len(may_range_params):
+        byte_start, byte_end = 0, None
+    else:
+        byte_start, byte_end = int(may_range_params[0]), int(may_range_params[1])
+        byte_end += byte_start - 1
+    return s3_rw.read_jsonl(
+        remove_non_official_s3_args(s3path),
+        byte_start,
+        byte_end,
+        AbsReaderWriter.MODE_BIN,
+    )
+
+
+@click.group()
+def cli():
+    pass
+
+
+@cli.command()
+@click.option(
+    "-j",
+    "--jsonl",
+    "jsonl",
+    type=str,
+    help="输入 jsonl 路径，本地或者 s3 上的文件",
+    required=True,
+)
+@click.option(
+    "-m",
+    "--method",
+    "method",
+    type=parse_pdf_methods,
+    help="指定解析方法。txt: 文本型 pdf 解析方法， ocr: 光学识别解析 pdf, auto: 程序智能选择解析方法",
+    default="auto",
+)
+@click.option(
+    "-o",
+    "--output-dir",
+    "output_dir",
+    type=str,
+    help="输出到本地目录",
+    default="",
+)
+def jsonl(jsonl, method, output_dir):
+    print("haha")
+    model_config.__use_inside_model__ = False
+    full_jsonl_path = os.path.realpath(jsonl)
+    if output_dir == "":
+        output_dir = os.path.join(os.path.dirname(full_jsonl_path), "output")
+
+    if jsonl.startswith("s3://"):
+        jso = json_parse.loads(read_s3_path(jsonl).decode("utf-8"))
+    else:
+        with open(jsonl) as f:
+            jso = json_parse.loads(f.readline())
+    s3_file_path = jso.get("file_location")
+    if s3_file_path is None:
+        s3_file_path = jso.get("path")
+    pdf_file_name = Path(s3_file_path).stem
+    pdf_data = read_s3_path(s3_file_path)
+
+
+    print(pdf_file_name, jso, method)
+    do_parse(
+        output_dir,
+        pdf_file_name,
+        pdf_data,
+        jso["doc_layout_result"],
+        method,
+        f_dump_content_list=True,
+    )
+
+
+@cli.command()
+@click.option(
+    "-p",
+    "--pdf",
+    "pdf",
+    type=click.Path(exists=True),
+    required=True,
+    help="本地 PDF 文件",
+)
+@click.option(
+    "-j",
+    "--json",
+    "json_data",
+    type=click.Path(exists=True),
+    required=True,
+    help="本地模型推理出的 json 数据",
+)
+@click.option(
+    "-o", "--output-dir", "output_dir", type=str, help="本地输出目录", default=""
+)
+@click.option(
+    "-m",
+    "--method",
+    "method",
+    type=parse_pdf_methods,
+    help="指定解析方法。txt: 文本型 pdf 解析方法， ocr: 光学识别解析 pdf, auto: 程序智能选择解析方法",
+    default="auto",
+)
+def pdf(pdf, json_data, output_dir, method):
+    model_config.__use_inside_model__ = False
+    full_pdf_path = os.path.realpath(pdf)
+    if output_dir == "":
+        output_dir = os.path.join(os.path.dirname(full_pdf_path), "output")
+
+    def read_fn(path):
+        disk_rw = DiskReaderWriter(os.path.dirname(path))
+        return disk_rw.read(os.path.basename(path), AbsReaderWriter.MODE_BIN)
+
+    model_json_list = json_parse.loads(read_fn(json_data).decode("utf-8"))
+
+    file_name = str(Path(full_pdf_path).stem)
+    pdf_data = read_fn(full_pdf_path)
+    do_parse(
+        output_dir,
+        file_name,
+        pdf_data,
+        model_json_list,
+        method,
+        f_dump_content_list=True,
+    )
+
+
+if __name__ == "__main__":
+    cli()

magic_pdf/tools/common.py

+import os
+import json as json_parse
+import copy
+import click
+from loguru import logger
+from magic_pdf.libs.MakeContentConfig import DropMode, MakeMode
+from magic_pdf.libs.draw_bbox import draw_layout_bbox, draw_span_bbox
+from magic_pdf.pipe.UNIPipe import UNIPipe
+from magic_pdf.pipe.OCRPipe import OCRPipe
+from magic_pdf.pipe.TXTPipe import TXTPipe
+from magic_pdf.rw.DiskReaderWriter import DiskReaderWriter
+from magic_pdf.rw.AbsReaderWriter import AbsReaderWriter
+import magic_pdf.model as model_config
+
+
+def prepare_env(output_dir, pdf_file_name, method):
+    local_parent_dir = os.path.join(output_dir, pdf_file_name, method)
+
+    local_image_dir = os.path.join(str(local_parent_dir), "images")
+    local_md_dir = local_parent_dir
+    os.makedirs(local_image_dir, exist_ok=True)
+    os.makedirs(local_md_dir, exist_ok=True)
+    return local_image_dir, local_md_dir
+
+
+def do_parse(
+    output_dir,
+    pdf_file_name,
+    pdf_bytes,
+    model_list,
+    parse_method,
+    f_draw_span_bbox=True,
+    f_draw_layout_bbox=True,
+    f_dump_md=True,
+    f_dump_middle_json=True,
+    f_dump_model_json=True,
+    f_dump_orig_pdf=True,
+    f_dump_content_list=False,
+    f_make_md_mode=MakeMode.MM_MD,
+):
+    orig_model_list = copy.deepcopy(model_list)
+    local_image_dir, local_md_dir = prepare_env(output_dir, pdf_file_name, parse_method)
+    logger.info(f"local output dir is {local_md_dir}")
+    image_writer, md_writer = DiskReaderWriter(local_image_dir), DiskReaderWriter(
+        local_md_dir
+    )
+    image_dir = str(os.path.basename(local_image_dir))
+
+    if parse_method == "auto":
+        jso_useful_key = {"_pdf_type": "", "model_list": model_list}
+        pipe = UNIPipe(pdf_bytes, jso_useful_key, image_writer, is_debug=True)
+    elif parse_method == "txt":
+        pipe = TXTPipe(pdf_bytes, model_list, image_writer, is_debug=True)
+    elif parse_method == "ocr":
+        pipe = OCRPipe(pdf_bytes, model_list, image_writer, is_debug=True)
+    else:
+        logger.error("unknown parse method")
+        exit(1)
+
+    pipe.pipe_classify()
+
+    if len(model_list) == 0:
+        if model_config.__use_inside_model__:
+            pipe.pipe_analyze()
+            orig_model_list = copy.deepcopy(pipe.model_list)
+        else:
+            logger.error("need model list input")
+            exit(2)
+
+    pipe.pipe_parse()
+    pdf_info = pipe.pdf_mid_data["pdf_info"]
+    if f_draw_layout_bbox:
+        draw_layout_bbox(pdf_info, pdf_bytes, local_md_dir)
+    if f_draw_span_bbox:
+        draw_span_bbox(pdf_info, pdf_bytes, local_md_dir)
+
+    md_content = pipe.pipe_mk_markdown(
+        image_dir, drop_mode=DropMode.NONE, md_make_mode=f_make_md_mode
+    )
+    if f_dump_md:
+        md_writer.write(
+            content=md_content,
+            path=f"{pdf_file_name}.md",
+            mode=AbsReaderWriter.MODE_TXT,
+        )
+
+    if f_dump_middle_json:
+        md_writer.write(
+            content=json_parse.dumps(pipe.pdf_mid_data, ensure_ascii=False, indent=4),
+            path="middle.json",
+            mode=AbsReaderWriter.MODE_TXT,
+        )
+
+    if f_dump_model_json:
+        md_writer.write(
+            content=json_parse.dumps(orig_model_list, ensure_ascii=False, indent=4),
+            path="model.json",
+            mode=AbsReaderWriter.MODE_TXT,
+        )
+
+    if f_dump_orig_pdf:
+        md_writer.write(
+            content=pdf_bytes,
+            path="origin.pdf",
+            mode=AbsReaderWriter.MODE_BIN,
+        )
+
+    content_list = pipe.pipe_mk_uni_format(image_dir, drop_mode=DropMode.NONE)
+    if f_dump_content_list:
+        md_writer.write(
+            content=json_parse.dumps(content_list, ensure_ascii=False, indent=4),
+            path="content_list.json",
+            mode=AbsReaderWriter.MODE_TXT,
+        )
+
+
+parse_pdf_methods = click.Choice(["ocr", "txt", "auto"])

setup.py

@@ -52,7 +52,8 @@ if __name__ == '__main__':
         python_requires=">=3.9",  # 项目依赖的 Python 版本
         entry_points={
             "console_scripts": [
-                "magic-pdf = magic_pdf.cli.magicpdf:cli"
+                "magic-pdf = magic_pdf.tools.cli:cli",
+                "magic-pdf-dev = magic_pdf.tools.cli_dev:cli" 
             ],
         },  # 项目提供的可执行命令
         include_package_data=True,  # 是否包含非代码文件，如数据文件、配置文件等

tests/test_tools/assets/cli_dev/cli_test_01.jsonl

+{"file_location":"tests/test_tools/assets/cli_dev/cli_test_01.pdf","doc_layout_result":[{"layout_dets":[{"category_id":1,"poly":[882.4013061523438,169.93817138671875,1552.350341796875,169.93817138671875,1552.350341796875,625.8263549804688,882.4013061523438,625.8263549804688],"score":0.999992311000824},{"category_id":1,"poly":[882.474853515625,1450.92822265625,1551.4490966796875,1450.92822265625,1551.4490966796875,1877.5712890625,882.474853515625,1877.5712890625],"score":0.9999903440475464},{"category_id":1,"poly":[881.6513061523438,626.2058715820312,1552.1400146484375,626.2058715820312,1552.1400146484375,1450.604736328125,881.6513061523438,1450.604736328125],"score":0.9999856352806091},{"category_id":1,"poly":[149.41075134277344,232.1595001220703,819.0465087890625,232.1595001220703,819.0465087890625,625.8865356445312,149.41075134277344,625.8865356445312],"score":0.99998539686203},{"category_id":1,"poly":[149.3945770263672,1215.5172119140625,817.8850708007812,1215.5172119140625,817.8850708007812,1304.873291015625,149.3945770263672,1304.873291015625],"score":0.9999765157699585},{"category_id":1,"poly":[882.6979370117188,1880.13916015625,1552.15185546875,1880.13916015625,1552.15185546875,2031.339599609375,882.6979370117188,2031.339599609375],"score":0.9999744892120361},{"category_id":1,"poly":[148.96054077148438,743.3055419921875,818.6231689453125,743.3055419921875,818.6231689453125,1074.2369384765625,148.96054077148438,1074.2369384765625],"score":0.9999669790267944},{"category_id":1,"poly":[148.8435516357422,1791.14306640625,818.6885375976562,1791.14306640625,818.6885375976562,2030.794189453125,148.8435516357422,2030.794189453125],"score":0.9999618530273438},{"category_id":0,"poly":[150.7009735107422,684.0087890625,623.5106201171875,684.0087890625,623.5106201171875,717.03662109375,150.7009735107422,717.03662109375],"score":0.9999415278434753},{"category_id":8,"poly":[146.48068237304688,1331.6737060546875,317.2640075683594,1331.6737060546875,317.2640075683594,1400.1722412109375,146.48068237304688,1400.1722412109375],"score":0.9998958110809326},{"category_id":1,"poly":[149.42420959472656,1430.8782958984375,818.9042358398438,1430.8782958984375,818.9042358398438,1672.7386474609375,149.42420959472656,1672.7386474609375],"score":0.9998599290847778},{"category_id":1,"poly":[149.18746948242188,172.10252380371094,818.5662231445312,172.10252380371094,818.5662231445312,230.4594268798828,149.18746948242188,230.4594268798828],"score":0.9997718334197998},{"category_id":0,"poly":[149.0175018310547,1732.1090087890625,702.1005859375,1732.1090087890625,702.1005859375,1763.6046142578125,149.0175018310547,1763.6046142578125],"score":0.9997085928916931},{"category_id":2,"poly":[1519.802490234375,98.59099578857422,1551.985107421875,98.59099578857422,1551.985107421875,119.48420715332031,1519.802490234375,119.48420715332031],"score":0.9995552897453308},{"category_id":8,"poly":[146.9109649658203,1100.156494140625,544.2803344726562,1100.156494140625,544.2803344726562,1184.929443359375,146.9109649658203,1184.929443359375],"score":0.9995207786560059},{"category_id":2,"poly":[148.11611938476562,99.87767791748047,318.926025390625,99.87767791748047,318.926025390625,120.70393371582031,148.11611938476562,120.70393371582031],"score":0.999351441860199},{"category_id":9,"poly":[791.7642211914062,1130.056396484375,818.6940307617188,1130.056396484375,818.6940307617188,1161.1080322265625,791.7642211914062,1161.1080322265625],"score":0.9908884763717651},{"category_id":9,"poly":[788.37060546875,1346.8450927734375,818.5010986328125,1346.8450927734375,818.5010986328125,1377.370361328125,788.37060546875,1377.370361328125],"score":0.9873985052108765},{"category_id":14,"poly":[146,1103,543,1103,543,1184,146,1184],"score":0.94,"latex":"E\\!\\left(W\\right)\\!=\\!\\frac{E\\!\\left[H^{2}\\right]}{2E\\!\\left[H\\right]}\\!=\\!\\frac{E\\!\\left[H\\right]}{2}\\!\\!\\left(1\\!+\\!\\operatorname{CV}\\!\\left(H\\right)^{2}\\right)"},{"category_id":13,"poly":[1196,354,1278,354,1278,384,1196,384],"score":0.91,"latex":"p(1-q)"},{"category_id":13,"poly":[881,415,1020,415,1020,444,881,444],"score":0.91,"latex":"(1-p)(1-q)"},{"category_id":14,"poly":[147,1333,318,1333,318,1400,147,1400],"score":0.91,"latex":"\\mathbf{CV}\\big(H\\big)\\!=\\!\\frac{\\boldsymbol{\\upsigma}_{H}}{E\\big[H\\big]}"},{"category_id":13,"poly":[1197,657,1263,657,1263,686,1197,686],"score":0.9,"latex":"(1-p)"},{"category_id":13,"poly":[213,1217,263,1217,263,1244,213,1244],"score":0.88,"latex":"E[X]"},{"category_id":13,"poly":[214,1434,245,1434,245,1459,214,1459],"score":0.87,"latex":"\\upsigma_{H}"},{"category_id":13,"poly":[324,2002,373,2002,373,2028,324,2028],"score":0.84,"latex":"30\\%"},{"category_id":13,"poly":[1209,693,1225,693,1225,717,1209,717],"score":0.83,"latex":"p"},{"category_id":13,"poly":[990,449,1007,449,1007,474,990,474],"score":0.81,"latex":"p"},{"category_id":13,"poly":[346,1277,369,1277,369,1301,346,1301],"score":0.81,"latex":"H"},{"category_id":13,"poly":[1137,661,1154,661,1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\ No newline at end of file

tests/test_tools/test_cli.py

+import tempfile
+import os
+import shutil
+from click.testing import CliRunner
+
+from magic_pdf.tools.cli import cli
+
+
+def test_cli_pdf():
+    # setup
+    unitest_dir = "/tmp/magic_pdf/unittest/tools"
+    filename = "cli_test_01"
+    os.makedirs(unitest_dir, exist_ok=True)
+    temp_output_dir = tempfile.mkdtemp(dir="/tmp/magic_pdf/unittest/tools")
+
+    # run
+    runner = CliRunner()
+    result = runner.invoke(
+        cli,
+        [
+            "-p",
+            "tests/test_tools/assets/cli/pdf/cli_test_01.pdf",
+            "-o",
+            temp_output_dir,
+        ],
+    )
+
+    # check
+    assert result.exit_code == 0
+
+    base_output_dir = os.path.join(temp_output_dir, "cli_test_01/auto")
+
+    r = os.stat(os.path.join(base_output_dir, f"{filename}.md"))
+    assert r.st_size > 7000
+
+    r = os.stat(os.path.join(base_output_dir, "middle.json"))
+    assert r.st_size > 200000
+
+    r = os.stat(os.path.join(base_output_dir, "model.json"))
+    assert r.st_size > 15000
+
+    r = os.stat(os.path.join(base_output_dir, "origin.pdf"))
+    assert r.st_size > 500000
+
+    r = os.stat(os.path.join(base_output_dir, "layout.pdf"))
+    assert r.st_size > 500000
+
+    r = os.stat(os.path.join(base_output_dir, "spans.pdf"))
+    assert r.st_size > 500000
+
+    assert os.path.exists(os.path.join(base_output_dir, "images")) is True
+    assert os.path.isdir(os.path.join(base_output_dir, "images")) is True
+    assert os.path.exists(os.path.join(base_output_dir, "content_list.json")) is False
+
+    # teardown
+    shutil.rmtree(temp_output_dir)
+
+
+def test_cli_path():
+    # setup
+    unitest_dir = "/tmp/magic_pdf/unittest/tools"
+    os.makedirs(unitest_dir, exist_ok=True)
+    temp_output_dir = tempfile.mkdtemp(dir="/tmp/magic_pdf/unittest/tools")
+
+    # run
+    runner = CliRunner()
+    result = runner.invoke(
+        cli, ["-p", "tests/test_tools/assets/cli/path", "-o", temp_output_dir]
+    )
+
+    # check
+    assert result.exit_code == 0
+
+    filename = "cli_test_01"
+    base_output_dir = os.path.join(temp_output_dir, "cli_test_01/auto")
+
+    r = os.stat(os.path.join(base_output_dir, f"{filename}.md"))
+    assert r.st_size > 7000
+
+    r = os.stat(os.path.join(base_output_dir, "middle.json"))
+    assert r.st_size > 200000
+
+    r = os.stat(os.path.join(base_output_dir, "model.json"))
+    assert r.st_size > 15000
+
+    r = os.stat(os.path.join(base_output_dir, "origin.pdf"))
+    assert r.st_size > 500000
+
+    r = os.stat(os.path.join(base_output_dir, "layout.pdf"))
+    assert r.st_size > 500000
+
+    r = os.stat(os.path.join(base_output_dir, "spans.pdf"))
+    assert r.st_size > 500000
+
+    assert os.path.exists(os.path.join(base_output_dir, "images")) is True
+    assert os.path.isdir(os.path.join(base_output_dir, "images")) is True
+    assert os.path.exists(os.path.join(base_output_dir, "content_list.json")) is False
+
+    base_output_dir = os.path.join(temp_output_dir, "cli_test_02/auto")
+    filename = "cli_test_02"
+
+    r = os.stat(os.path.join(base_output_dir, f"{filename}.md"))
+    assert r.st_size > 5000
+
+    r = os.stat(os.path.join(base_output_dir, "middle.json"))
+    assert r.st_size > 200000
+
+    r = os.stat(os.path.join(base_output_dir, "model.json"))
+    assert r.st_size > 15000
+
+    r = os.stat(os.path.join(base_output_dir, "origin.pdf"))
+    assert r.st_size > 500000
+
+    r = os.stat(os.path.join(base_output_dir, "layout.pdf"))
+    assert r.st_size > 500000
+
+    r = os.stat(os.path.join(base_output_dir, "spans.pdf"))
+    assert r.st_size > 500000
+
+    assert os.path.exists(os.path.join(base_output_dir, "images")) is True
+    assert os.path.isdir(os.path.join(base_output_dir, "images")) is True
+    assert os.path.exists(os.path.join(base_output_dir, "content_list.json")) is False
+
+    # teardown
+    shutil.rmtree(temp_output_dir)

tests/test_tools/test_cli_dev.py

+import tempfile
+import os
+import shutil
+from click.testing import CliRunner
+
+from magic_pdf.tools import cli_dev
+
+
+def test_cli_pdf():
+    # setup
+    unitest_dir = "/tmp/magic_pdf/unittest/tools"
+    filename = "cli_test_01"
+    os.makedirs(unitest_dir, exist_ok=True)
+    temp_output_dir = tempfile.mkdtemp(dir="/tmp/magic_pdf/unittest/tools")
+
+    # run
+    runner = CliRunner()
+    result = runner.invoke(
+        cli_dev.cli,
+        [
+            "pdf",
+            "-p",
+            "tests/test_tools/assets/cli/pdf/cli_test_01.pdf",
+            "-j",
+            "tests/test_tools/assets/cli_dev/cli_test_01.model.json",
+            "-o",
+            temp_output_dir,
+        ],
+    )
+
+    # check
+    assert result.exit_code == 0
+
+    base_output_dir = os.path.join(temp_output_dir, "cli_test_01/auto")
+
+    r = os.stat(os.path.join(base_output_dir, "content_list.json"))
+    assert r.st_size > 5000
+
+    r = os.stat(os.path.join(base_output_dir, f"{filename}.md"))
+    assert r.st_size > 7000
+
+    r = os.stat(os.path.join(base_output_dir, "middle.json"))
+    assert r.st_size > 200000
+
+    r = os.stat(os.path.join(base_output_dir, "model.json"))
+    assert r.st_size > 15000
+
+    r = os.stat(os.path.join(base_output_dir, "origin.pdf"))
+    assert r.st_size > 500000
+
+    r = os.stat(os.path.join(base_output_dir, "layout.pdf"))
+    assert r.st_size > 500000
+
+    r = os.stat(os.path.join(base_output_dir, "spans.pdf"))
+    assert r.st_size > 500000
+
+    assert os.path.exists(os.path.join(base_output_dir, "images")) is True
+    assert os.path.isdir(os.path.join(base_output_dir, "images")) is True
+
+    # teardown
+    shutil.rmtree(temp_output_dir)
+
+
+def test_cli_jsonl():
+    # setup
+    unitest_dir = "/tmp/magic_pdf/unittest/tools"
+    filename = "cli_test_01"
+    os.makedirs(unitest_dir, exist_ok=True)
+    temp_output_dir = tempfile.mkdtemp(dir="/tmp/magic_pdf/unittest/tools")
+
+    def mock_read_s3_path(s3path):
+        with open(s3path, "rb") as f:
+            return f.read()
+
+    cli_dev.read_s3_path = mock_read_s3_path # mock
+
+    # run
+    runner = CliRunner()
+    result = runner.invoke(
+        cli_dev.cli,
+        [
+            "jsonl",
+            "-j",
+            "tests/test_tools/assets/cli_dev/cli_test_01.jsonl",
+            "-o",
+            temp_output_dir,
+        ],
+    )
+
+    # check
+    assert result.exit_code == 0
+
+    base_output_dir = os.path.join(temp_output_dir, "cli_test_01/auto")
+
+    r = os.stat(os.path.join(base_output_dir, "content_list.json"))
+    assert r.st_size > 5000
+
+    r = os.stat(os.path.join(base_output_dir, f"{filename}.md"))
+    assert r.st_size > 7000
+
+    r = os.stat(os.path.join(base_output_dir, "middle.json"))
+    assert r.st_size > 200000
+
+    r = os.stat(os.path.join(base_output_dir, "model.json"))
+    assert r.st_size > 15000
+
+    r = os.stat(os.path.join(base_output_dir, "origin.pdf"))
+    assert r.st_size > 500000
+
+    r = os.stat(os.path.join(base_output_dir, "layout.pdf"))
+    assert r.st_size > 500000
+
+    r = os.stat(os.path.join(base_output_dir, "spans.pdf"))
+    assert r.st_size > 500000
+
+    assert os.path.exists(os.path.join(base_output_dir, "images")) is True
+    assert os.path.isdir(os.path.join(base_output_dir, "images")) is True
+
+    # teardown
+    shutil.rmtree(temp_output_dir)

tests/test_tools/test_common.py

+import tempfile
+import os
+import shutil
+
+import pytest
+
+from magic_pdf.tools.common import do_parse
+
+
+@pytest.mark.parametrize("method", ["auto", "txt", "ocr"])
+def test_common_do_parse(method):
+    # setup
+    unitest_dir = "/tmp/magic_pdf/unittest/tools"
+    filename = "fake"
+    os.makedirs(unitest_dir, exist_ok=True)
+
+    temp_output_dir = tempfile.mkdtemp(dir="/tmp/magic_pdf/unittest/tools")
+
+    # run
+    with open("tests/test_tools/assets/common/cli_test_01.pdf", "rb") as f:
+        bits = f.read()
+    do_parse(temp_output_dir, filename, bits, [], method, f_dump_content_list=True)
+
+    # check
+    base_output_dir = os.path.join(temp_output_dir, f"fake/{method}")
+
+    r = os.stat(os.path.join(base_output_dir, "content_list.json"))
+    assert r.st_size > 5000
+
+    r = os.stat(os.path.join(base_output_dir, f"{filename}.md"))
+    assert r.st_size > 7000
+
+    r = os.stat(os.path.join(base_output_dir, "middle.json"))
+    assert r.st_size > 200000
+
+    r = os.stat(os.path.join(base_output_dir, "model.json"))
+    assert r.st_size > 15000
+
+    r = os.stat(os.path.join(base_output_dir, "origin.pdf"))
+    assert r.st_size > 500000
+
+    r = os.stat(os.path.join(base_output_dir, "layout.pdf"))
+    assert r.st_size > 500000
+
+    r = os.stat(os.path.join(base_output_dir, "spans.pdf"))
+    assert r.st_size > 500000
+
+    os.path.exists(os.path.join(base_output_dir, "images"))
+    os.path.isdir(os.path.join(base_output_dir, "images"))
+
+    # teardown
+    shutil.rmtree(temp_output_dir)