Skip to content

P
pdf-miner
Commit 1fac6aa7 authored by myhloli's avatar myhloli
Browse files
Options

update:Integrate the PDF-Extract-Kit inside

parent 4703503b
Hide whitespace changes
Inline Side-by-side
Showing with 6049 additions and 131 deletions
magic_pdf/cli/magicpdf.py
View file @ 1fac6aa7
......@@ -85,6 +85,7 @@ def do_parse(
orig_model_list = copy.deepcopy(model_list)
local_image_dir, local_md_dir = prepare_env(pdf_file_name, parse_method)
logger.info(f"local output dir is {local_md_dir}")
image_writer, md_writer = DiskReaderWriter(local_image_dir), DiskReaderWriter(local_md_dir)
image_dir = str(os.path.basename(local_image_dir))
......
magic_pdf/model/doc_analyze_by_custom_model.py
View file @ 1fac6aa7
import fitz
import numpy as np
from loguru import logger
from magic_pdf.model.model_list import MODEL
from magic_pdf.model.model_list import MODEL, MODEL_TYPE
import magic_pdf.model as model_config
......@@ -34,8 +34,8 @@ def load_images_from_pdf(pdf_bytes: bytes, dpi=200) -> list:
pm = page.get_pixmap(matrix=mat, alpha=False)
# if width or height > 3000 pixels, don't enlarge the image
if pix.width > 3000 or pix.height > 3000:
pix = page.get_pixmap(matrix=fitz.Matrix(1, 1), alpha=False)
if pm.width > 3000 or pm.height > 3000:
pm = page.get_pixmap(matrix=fitz.Matrix(1, 1), alpha=False)
img = Image.frombytes("RGB", (pm.width, pm.height), pm.samples)
img = np.array(img)
......@@ -44,31 +44,36 @@ def load_images_from_pdf(pdf_bytes: bytes, dpi=200) -> list:
return images
def doc_analyze(pdf_bytes: bytes, ocr: bool = False, show_log: bool = False, model=MODEL.Paddle):
def doc_analyze(pdf_bytes: bytes, ocr: bool = False, show_log: bool = False, model=MODEL.Paddle,
model_type=MODEL_TYPE.SINGLE_PAGE):
custom_model = None
if model_config.__use_inside_model__:
from magic_pdf.model.pp_structure_v2 import CustomPaddleModel
if model == MODEL.Paddle:
from magic_pdf.model.pp_structure_v2 import CustomPaddleModel
custom_model = CustomPaddleModel(ocr=ocr, show_log=show_log)
elif model == MODEL.PEK:
from magic_pdf.model.pdf_extract_kit import CustomPEKModel
custom_model = CustomPEKModel(ocr=ocr, show_log=show_log)
else:
logger.error("Not allow model_name!")
exit(1)
else:
logger.error("use_inside_model is False, not allow to use inside model")
exit(1)
images = load_images_from_pdf(pdf_bytes)
custom_model = None
if model == MODEL.Paddle:
custom_model = CustomPaddleModel(ocr=ocr, show_log=show_log)
else:
pass
model_json = []
for index, img_dict in enumerate(images):
img = img_dict["img"]
page_width = img_dict["width"]
page_height = img_dict["height"]
result = custom_model(img)
page_info = {"page_no": index, "height": page_height, "width": page_width}
page_dict = {"layout_dets": result, "page_info": page_info}
model_json.append(page_dict)
# @todo 把公式识别放在后置位置,待整本全部模型结果出来之后再补公式数据
model_json = []
if model_type == MODEL_TYPE.SINGLE_PAGE:
for index, img_dict in enumerate(images):
img = img_dict["img"]
page_width = img_dict["width"]
page_height = img_dict["height"]
result = custom_model(img)
page_info = {"page_no": index, "height": page_height, "width": page_width}
page_dict = {"layout_dets": result, "page_info": page_info}
model_json.append(page_dict)
elif model_type == MODEL_TYPE.MULTI_PAGE:
model_json = custom_model(images)
return model_json
magic_pdf/model/model_list.py
View file @ 1fac6aa7
class MODEL:
Paddle = "pp_structure_v2"
PEK = "pdf_extract_kit"
class MODEL_TYPE:
# 单页解析
SINGLE_PAGE = 1
# 多页解析
MULTI_PAGE = 2
magic_pdf/model/pdf_extract_kit.py
View file @ 1fac6aa7
import os
import time
import cv2
import fitz
import numpy as np
import torch
import unimernet.tasks as tasks
import yaml
from PIL import Image
from torch.utils.data import DataLoader, Dataset
from torchvision import transforms
from ultralytics import YOLO
from loguru import logger
from magic_pdf.model.pek_sub_modules.layoutlmv3.model_init import Layoutlmv3_Predictor
from unimernet.common.config import Config
import unimernet.tasks as tasks
from unimernet.processors import load_processor
import argparse
from torchvision import transforms
from magic_pdf.model.pek_sub_modules.self_modify import ModifiedPaddleOCR
class CustomPEKModel:
def __init__(self, ocr: bool = False, show_log: bool = False):
## ======== model init ========##
with open('configs/model_configs.yaml') as f:
model_configs = yaml.load(f, Loader=yaml.FullLoader)
img_size = model_configs['model_args']['img_size']
conf_thres = model_configs['model_args']['conf_thres']
iou_thres = model_configs['model_args']['iou_thres']
device = model_configs['model_args']['device']
dpi = model_configs['model_args']['pdf_dpi']
mfd_model = mfd_model_init(model_configs['model_args']['mfd_weight'])
mfr_model, mfr_vis_processors = mfr_model_init(model_configs['model_args']['mfr_weight'], device=device)
mfr_transform = transforms.Compose([mfr_vis_processors, ])
layout_model = layout_model_init(model_configs['model_args']['layout_weight'])
ocr_model = ModifiedPaddleOCR(show_log=True)
print(now.strftime('%Y-%m-%d %H:%M:%S'))
print('Model init done!')
## ======== model init ========##
def layout_model_init(weight, config_file):
model = Layoutlmv3_Predictor(weight, config_file)
return model
def __call__(self, image):
# layout检测 + 公式检测
doc_layout_result = []
latex_filling_list = []
mf_image_list = []
def mfr_model_init(weight_dir, cfg_path, device='cpu'):
args = argparse.Namespace(cfg_path=cfg_path, options=None)
cfg = Config(args)
cfg.config.model.pretrained = os.path.join(weight_dir, "pytorch_model.bin")
cfg.config.model.model_config.model_name = weight_dir
cfg.config.model.tokenizer_config.path = weight_dir
task = tasks.setup_task(cfg)
model = task.build_model(cfg)
model = model.to(device)
vis_processor = load_processor('formula_image_eval', cfg.config.datasets.formula_rec_eval.vis_processor.eval)
return model, vis_processor
img_H, img_W = image.shape[0], image.shape[1]
layout_res = layout_model(image, ignore_catids=[])
# 公式检测
mfd_res = mfd_model.predict(image, imgsz=img_size, conf=conf_thres, iou=iou_thres, verbose=True)[0]
for xyxy, conf, cla in zip(mfd_res.boxes.xyxy.cpu(), mfd_res.boxes.conf.cpu(), mfd_res.boxes.cls.cpu()):
xmin, ymin, xmax, ymax = [int(p.item()) for p in xyxy]
new_item = {
'category_id': 13 + int(cla.item()),
'poly': [xmin, ymin, xmax, ymin, xmax, ymax, xmin, ymax],
'score': round(float(conf.item()), 2),
'latex': '',
}
layout_res['layout_dets'].append(new_item)
latex_filling_list.append(new_item)
bbox_img = get_croped_image(Image.fromarray(image), [xmin, ymin, xmax, ymax])
mf_image_list.append(bbox_img)
layout_res['page_info'] = dict(
page_no=idx,
height=img_H,
width=img_W
class CustomPEKModel:
def __init__(self, ocr: bool = False, show_log: bool = False, **kwargs):
"""
======== model init ========
"""
# 获取当前文件（即 pdf_extract_kit.py）的绝对路径
current_file_path = os.path.abspath(__file__)
# 获取当前文件所在的目录(model)
current_dir = os.path.dirname(current_file_path)
# 上一级目录(magic_pdf)
root_dir = os.path.dirname(current_dir)
# model_config目录
model_config_dir = os.path.join(root_dir, 'resources', 'model_config')
# 构建 model_configs.yaml 文件的完整路径
config_path = os.path.join(model_config_dir, 'model_configs.yaml')
with open(config_path, "r") as f:
self.configs = yaml.load(f, Loader=yaml.FullLoader)
# 初始化解析配置
self.apply_layout = kwargs.get("apply_layout", self.configs["config"]["layout"])
self.apply_formula = kwargs.get("apply_formula", self.configs["config"]["formula"])
self.apply_ocr = ocr
logger.info(
"DocAnalysis init, this may take some times. apply_layout: {}, apply_formula: {}, apply_ocr: {}".format(
self.apply_layout, self.apply_formula, self.apply_ocr
)
doc_layout_result.append(layout_res)
)
assert self.apply_layout, "DocAnalysis must contain layout model."
# 初始化解析方案
self.device = self.configs["config"]["device"]
logger.info("using device: {}".format(self.device))
# 初始化layout模型
self.layout_model = layout_model_init(
os.path.join(root_dir, self.configs['weights']['layout']),
os.path.join(model_config_dir, "layoutlmv3", "layoutlmv3_base_inference.yaml")
)
# 初始化公式识别
if self.apply_formula:
# 初始化公式检测模型
self.mfd_model = YOLO(model=str(os.path.join(root_dir, self.configs["weights"]["mfd"])))
# 初始化公式解析模型
mfr_config_path = os.path.join(model_config_dir, 'UniMERNet', 'demo.yaml')
self.mfr_model, mfr_vis_processors = mfr_model_init(
os.path.join(root_dir, self.configs["weights"]["mfr"]), mfr_config_path,
device=self.device)
self.mfr_transform = transforms.Compose([mfr_vis_processors, ])
# 初始化ocr
if self.apply_ocr:
self.ocr_model = ModifiedPaddleOCR(show_log=show_log)
# 公式识别，因为识别速度较慢，为了提速，把单个pdf的所有公式裁剪完，一起批量做识别。
a = time.time()
dataset = MathDataset(mf_image_list, transform=mfr_transform)
dataloader = DataLoader(dataset, batch_size=128, num_workers=0)
mfr_res = []
gpu_total_cost = 0
for imgs in dataloader:
imgs = imgs.to(device)
gpu_start = time.time()
output = mfr_model.generate({'image': imgs})
gpu_cost = time.time() - gpu_start
gpu_total_cost += gpu_cost
print(f"gpu_cost: {gpu_cost}")
mfr_res.extend(output['pred_str'])
print(f"gpu_total_cost: {gpu_total_cost}")
for res, latex in zip(latex_filling_list, mfr_res):
res['latex'] = latex_rm_whitespace(latex)
b = time.time()
print("formula nums:", len(mf_image_list), "mfr time:", round(b - a, 2))
logger.info('DocAnalysis init done!')
# ocr识别
for idx, image in enumerate(img_list):
pil_img = Image.fromarray(cv2.cvtColor(image, cv2.COLOR_RGB2BGR))
single_page_res = doc_layout_result[idx]['layout_dets']
single_page_mfdetrec_res = []
for res in single_page_res:
if int(res['category_id']) in [13, 14]:
xmin, ymin = int(res['poly'][0]), int(res['poly'][1])
xmax, ymax = int(res['poly'][4]), int(res['poly'][5])
single_page_mfdetrec_res.append({
"bbox": [xmin, ymin, xmax, ymax],
})
for res in single_page_res:
if int(res['category_id']) in [0, 1, 2, 4, 6, 7]: # 需要进行ocr的类别
xmin, ymin = int(res['poly'][0]), int(res['poly'][1])
xmax, ymax = int(res['poly'][4]), int(res['poly'][5])
crop_box = [xmin, ymin, xmax, ymax]
cropped_img = Image.new('RGB', pil_img.size, 'white')
cropped_img.paste(pil_img.crop(crop_box), crop_box)
cropped_img = cv2.cvtColor(np.asarray(cropped_img), cv2.COLOR_RGB2BGR)
ocr_res = ocr_model.ocr(cropped_img, mfd_res=single_page_mfdetrec_res)[0]
if ocr_res:
for box_ocr_res in ocr_res:
p1, p2, p3, p4 = box_ocr_res[0]
text, score = box_ocr_res[1]
doc_layout_result[idx]['layout_dets'].append({
'category_id': 15,
'poly': p1 + p2 + p3 + p4,
'score': round(score, 2),
'text': text,
})
output_dir = args.output
os.makedirs(output_dir, exist_ok=True)
basename = os.path.basename(single_pdf)[0:-4]
with open(os.path.join(output_dir, f'{basename}.json'), 'w') as f:
json.dump(doc_layout_result, f)
\ No newline at end of file
def __call__(self, image):
pass
magic_pdf/model/pek_sub_modules/layoutlmv3/backbone.py 0 → 100644
View file @ 1fac6aa7
# --------------------------------------------------------------------------------
# VIT: Multi-Path Vision Transformer for Dense Prediction
# Copyright (c) 2022 Electronics and Telecommunications Research Institute (ETRI).
# All Rights Reserved.
# Written by Youngwan Lee
# This source code is licensed(Dual License(GPL3.0 & Commercial)) under the license found in the
# LICENSE file in the root directory of this source tree.
# --------------------------------------------------------------------------------
# References:
# timm: https://github.com/rwightman/pytorch-image-models/tree/master/timm
# CoaT: https://github.com/mlpc-ucsd/CoaT
# --------------------------------------------------------------------------------
import torch
from detectron2.layers import (
ShapeSpec,
)
from detectron2.modeling import Backbone, BACKBONE_REGISTRY, FPN
from detectron2.modeling.backbone.fpn import LastLevelP6P7, LastLevelMaxPool
from .beit import beit_base_patch16, dit_base_patch16, dit_large_patch16, beit_large_patch16
from .deit import deit_base_patch16, mae_base_patch16
from .layoutlmft.models.layoutlmv3 import LayoutLMv3Model
from transformers import AutoConfig
__all__ = [
"build_vit_fpn_backbone",
]
class VIT_Backbone(Backbone):
"""
Implement VIT backbone.
"""
def __init__(self, name, out_features, drop_path, img_size, pos_type, model_kwargs,
config_path=None, image_only=False, cfg=None):
super().__init__()
self._out_features = out_features
if 'base' in name:
self._out_feature_strides = {"layer3": 4, "layer5": 8, "layer7": 16, "layer11": 32}
self._out_feature_channels = {"layer3": 768, "layer5": 768, "layer7": 768, "layer11": 768}
else:
self._out_feature_strides = {"layer7": 4, "layer11": 8, "layer15": 16, "layer23": 32}
self._out_feature_channels = {"layer7": 1024, "layer11": 1024, "layer15": 1024, "layer23": 1024}
if name == 'beit_base_patch16':
model_func = beit_base_patch16
elif name == 'dit_base_patch16':
model_func = dit_base_patch16
elif name == "deit_base_patch16":
model_func = deit_base_patch16
elif name == "mae_base_patch16":
model_func = mae_base_patch16
elif name == "dit_large_patch16":
model_func = dit_large_patch16
elif name == "beit_large_patch16":
model_func = beit_large_patch16
if 'beit' in name or 'dit' in name:
if pos_type == "abs":
self.backbone = model_func(img_size=img_size,
out_features=out_features,
drop_path_rate=drop_path,
use_abs_pos_emb=True,
**model_kwargs)
elif pos_type == "shared_rel":
self.backbone = model_func(img_size=img_size,
out_features=out_features,
drop_path_rate=drop_path,
use_shared_rel_pos_bias=True,
**model_kwargs)
elif pos_type == "rel":
self.backbone = model_func(img_size=img_size,
out_features=out_features,
drop_path_rate=drop_path,
use_rel_pos_bias=True,
**model_kwargs)
else:
raise ValueError()
elif "layoutlmv3" in name:
config = AutoConfig.from_pretrained(config_path)
# disable relative bias as DiT
config.has_spatial_attention_bias = False
config.has_relative_attention_bias = False
self.backbone = LayoutLMv3Model(config, detection=True,
out_features=out_features, image_only=image_only)
else:
self.backbone = model_func(img_size=img_size,
out_features=out_features,
drop_path_rate=drop_path,
**model_kwargs)
self.name = name
def forward(self, x):
"""
Args:
x: Tensor of shape (N,C,H,W). H, W must be a multiple of ``self.size_divisibility``.
Returns:
dict[str->Tensor]: names and the corresponding features
"""
if "layoutlmv3" in self.name:
return self.backbone.forward(
input_ids=x["input_ids"] if "input_ids" in x else None,
bbox=x["bbox"] if "bbox" in x else None,
images=x["images"] if "images" in x else None,
attention_mask=x["attention_mask"] if "attention_mask" in x else None,
# output_hidden_states=True,
)
assert x.dim() == 4, f"VIT takes an input of shape (N, C, H, W). Got {x.shape} instead!"
return self.backbone.forward_features(x)
def output_shape(self):
return {
name: ShapeSpec(
channels=self._out_feature_channels[name], stride=self._out_feature_strides[name]
)
for name in self._out_features
}
def build_VIT_backbone(cfg):
"""
Create a VIT instance from config.
Args:
cfg: a detectron2 CfgNode
Returns:
A VIT backbone instance.
"""
# fmt: off
name = cfg.MODEL.VIT.NAME
out_features = cfg.MODEL.VIT.OUT_FEATURES
drop_path = cfg.MODEL.VIT.DROP_PATH
img_size = cfg.MODEL.VIT.IMG_SIZE
pos_type = cfg.MODEL.VIT.POS_TYPE
model_kwargs = eval(str(cfg.MODEL.VIT.MODEL_KWARGS).replace("`", ""))
if 'layoutlmv3' in name:
if cfg.MODEL.CONFIG_PATH != '':
config_path = cfg.MODEL.CONFIG_PATH
else:
config_path = cfg.MODEL.WEIGHTS.replace('pytorch_model.bin', '') # layoutlmv3 pre-trained models
config_path = config_path.replace('model_final.pth', '') # detection fine-tuned models
else:
config_path = None
return VIT_Backbone(name, out_features, drop_path, img_size, pos_type, model_kwargs,
config_path=config_path, image_only=cfg.MODEL.IMAGE_ONLY, cfg=cfg)
@BACKBONE_REGISTRY.register()
def build_vit_fpn_backbone(cfg, input_shape: ShapeSpec):
"""
Create a VIT w/ FPN backbone.
Args:
cfg: a detectron2 CfgNode
Returns:
backbone (Backbone): backbone module, must be a subclass of :class:`Backbone`.
"""
bottom_up = build_VIT_backbone(cfg)
in_features = cfg.MODEL.FPN.IN_FEATURES
out_channels = cfg.MODEL.FPN.OUT_CHANNELS
backbone = FPN(
bottom_up=bottom_up,
in_features=in_features,
out_channels=out_channels,
norm=cfg.MODEL.FPN.NORM,
top_block=LastLevelMaxPool(),
fuse_type=cfg.MODEL.FPN.FUSE_TYPE,
)
return backbone
magic_pdf/model/pek_sub_modules/layoutlmv3/beit.py 0 → 100644
View file @ 1fac6aa7
""" Vision Transformer (ViT) in PyTorch
A PyTorch implement of Vision Transformers as described in
'An Image Is Worth 16 x 16 Words: Transformers for Image Recognition at Scale' - https://arxiv.org/abs/2010.11929
The official jax code is released and available at https://github.com/google-research/vision_transformer
Status/TODO:
* Models updated to be compatible with official impl. Args added to support backward compat for old PyTorch weights.
* Weights ported from official jax impl for 384x384 base and small models, 16x16 and 32x32 patches.
* Trained (supervised on ImageNet-1k) my custom 'small' patch model to 77.9, 'base' to 79.4 top-1 with this code.
* Hopefully find time and GPUs for SSL or unsupervised pretraining on OpenImages w/ ImageNet fine-tune in future.
Acknowledgments:
* The paper authors for releasing code and weights, thanks!
* I fixed my class token impl based on Phil Wang's https://github.com/lucidrains/vit-pytorch ... check it out
for some einops/einsum fun
* Simple transformer style inspired by Andrej Karpathy's https://github.com/karpathy/minGPT
* Bert reference code checks against Huggingface Transformers and Tensorflow Bert
Hacked together by / Copyright 2020 Ross Wightman
"""
import warnings
import math
import torch
from functools import partial
import torch.nn as nn
import torch.nn.functional as F
import torch.utils.checkpoint as checkpoint
from timm.models.layers import drop_path, to_2tuple, trunc_normal_
def _cfg(url='', **kwargs):
return {
'url': url,
'num_classes': 1000, 'input_size': (3, 224, 224), 'pool_size': None,
'crop_pct': .9, 'interpolation': 'bicubic',
'mean': (0.5, 0.5, 0.5), 'std': (0.5, 0.5, 0.5),
**kwargs
}
class DropPath(nn.Module):
"""Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks).
"""
def __init__(self, drop_prob=None):
super(DropPath, self).__init__()
self.drop_prob = drop_prob
def forward(self, x):
return drop_path(x, self.drop_prob, self.training)
def extra_repr(self) -> str:
return 'p={}'.format(self.drop_prob)
class Mlp(nn.Module):
def __init__(self, in_features, hidden_features=None, out_features=None, act_layer=nn.GELU, drop=0.):
super().__init__()
out_features = out_features or in_features
hidden_features = hidden_features or in_features
self.fc1 = nn.Linear(in_features, hidden_features)
self.act = act_layer()
self.fc2 = nn.Linear(hidden_features, out_features)
self.drop = nn.Dropout(drop)
def forward(self, x):
x = self.fc1(x)
x = self.act(x)
# x = self.drop(x)
# commit this for the orignal BERT implement
x = self.fc2(x)
x = self.drop(x)
return x
class Attention(nn.Module):
def __init__(
self, dim, num_heads=8, qkv_bias=False, qk_scale=None, attn_drop=0.,
proj_drop=0., window_size=None, attn_head_dim=None):
super().__init__()
self.num_heads = num_heads
head_dim = dim // num_heads
if attn_head_dim is not None:
head_dim = attn_head_dim
all_head_dim = head_dim * self.num_heads
# NOTE scale factor was wrong in my original version, can set manually to be compat with prev weights
self.scale = qk_scale or head_dim ** -0.5
self.qkv = nn.Linear(dim, all_head_dim * 3, bias=False)
if qkv_bias:
self.q_bias = nn.Parameter(torch.zeros(all_head_dim))
self.v_bias = nn.Parameter(torch.zeros(all_head_dim))
else:
self.q_bias = None
self.v_bias = None
if window_size:
self.window_size = window_size
self.num_relative_distance = (2 * window_size[0] - 1) * (2 * window_size[1] - 1) + 3
self.relative_position_bias_table = nn.Parameter(
torch.zeros(self.num_relative_distance, num_heads)) # 2*Wh-1 * 2*Ww-1, nH
# cls to token & token 2 cls & cls to cls
# get pair-wise relative position index for each token inside the window
coords_h = torch.arange(window_size[0])
coords_w = torch.arange(window_size[1])
coords = torch.stack(torch.meshgrid([coords_h, coords_w])) # 2, Wh, Ww
coords_flatten = torch.flatten(coords, 1) # 2, Wh*Ww
relative_coords = coords_flatten[:, :, None] - coords_flatten[:, None, :] # 2, Wh*Ww, Wh*Ww
relative_coords = relative_coords.permute(1, 2, 0).contiguous() # Wh*Ww, Wh*Ww, 2
relative_coords[:, :, 0] += window_size[0] - 1 # shift to start from 0
relative_coords[:, :, 1] += window_size[1] - 1
relative_coords[:, :, 0] *= 2 * window_size[1] - 1
relative_position_index = \
torch.zeros(size=(window_size[0] * window_size[1] + 1,) * 2, dtype=relative_coords.dtype)
relative_position_index[1:, 1:] = relative_coords.sum(-1) # Wh*Ww, Wh*Ww
relative_position_index[0, 0:] = self.num_relative_distance - 3
relative_position_index[0:, 0] = self.num_relative_distance - 2
relative_position_index[0, 0] = self.num_relative_distance - 1
self.register_buffer("relative_position_index", relative_position_index)
# trunc_normal_(self.relative_position_bias_table, std=.0)
else:
self.window_size = None
self.relative_position_bias_table = None
self.relative_position_index = None
self.attn_drop = nn.Dropout(attn_drop)
self.proj = nn.Linear(all_head_dim, dim)
self.proj_drop = nn.Dropout(proj_drop)
def forward(self, x, rel_pos_bias=None, training_window_size=None):
B, N, C = x.shape
qkv_bias = None
if self.q_bias is not None:
qkv_bias = torch.cat((self.q_bias, torch.zeros_like(self.v_bias, requires_grad=False), self.v_bias))
# qkv = self.qkv(x).reshape(B, N, 3, self.num_heads, C // self.num_heads).permute(2, 0, 3, 1, 4)
qkv = F.linear(input=x, weight=self.qkv.weight, bias=qkv_bias)
qkv = qkv.reshape(B, N, 3, self.num_heads, -1).permute(2, 0, 3, 1, 4)
q, k, v = qkv[0], qkv[1], qkv[2] # make torchscript happy (cannot use tensor as tuple)
q = q * self.scale
attn = (q @ k.transpose(-2, -1))
if self.relative_position_bias_table is not None:
if training_window_size == self.window_size:
relative_position_bias = \
self.relative_position_bias_table[self.relative_position_index.view(-1)].view(
self.window_size[0] * self.window_size[1] + 1,
self.window_size[0] * self.window_size[1] + 1, -1) # Wh*Ww,Wh*Ww,nH
relative_position_bias = relative_position_bias.permute(2, 0, 1).contiguous() # nH, Wh*Ww, Wh*Ww
attn = attn + relative_position_bias.unsqueeze(0)
else:
training_window_size = tuple(training_window_size.tolist())
new_num_relative_distance = (2 * training_window_size[0] - 1) * (2 * training_window_size[1] - 1) + 3
# new_num_relative_dis 为 所有可能的相对位置选项，包含cls-cls，tok-cls，与cls-tok
new_relative_position_bias_table = F.interpolate(
self.relative_position_bias_table[:-3, :].permute(1, 0).view(1, self.num_heads,
2 * self.window_size[0] - 1,
2 * self.window_size[1] - 1),
size=(2 * training_window_size[0] - 1, 2 * training_window_size[1] - 1), mode='bicubic',
align_corners=False)
new_relative_position_bias_table = new_relative_position_bias_table.view(self.num_heads,
new_num_relative_distance - 3).permute(
1, 0)
new_relative_position_bias_table = torch.cat(
[new_relative_position_bias_table, self.relative_position_bias_table[-3::]], dim=0)
# get pair-wise relative position index for each token inside the window
coords_h = torch.arange(training_window_size[0])
coords_w = torch.arange(training_window_size[1])
coords = torch.stack(torch.meshgrid([coords_h, coords_w])) # 2, Wh, Ww
coords_flatten = torch.flatten(coords, 1) # 2, Wh*Ww
relative_coords = coords_flatten[:, :, None] - coords_flatten[:, None, :] # 2, Wh*Ww, Wh*Ww
relative_coords = relative_coords.permute(1, 2, 0).contiguous() # Wh*Ww, Wh*Ww, 2
relative_coords[:, :, 0] += training_window_size[0] - 1 # shift to start from 0
relative_coords[:, :, 1] += training_window_size[1] - 1
relative_coords[:, :, 0] *= 2 * training_window_size[1] - 1
relative_position_index = \
torch.zeros(size=(training_window_size[0] * training_window_size[1] + 1,) * 2,
dtype=relative_coords.dtype)
relative_position_index[1:, 1:] = relative_coords.sum(-1) # Wh*Ww, Wh*Ww
relative_position_index[0, 0:] = new_num_relative_distance - 3
relative_position_index[0:, 0] = new_num_relative_distance - 2
relative_position_index[0, 0] = new_num_relative_distance - 1
relative_position_bias = \
new_relative_position_bias_table[relative_position_index.view(-1)].view(
training_window_size[0] * training_window_size[1] + 1,
training_window_size[0] * training_window_size[1] + 1, -1) # Wh*Ww,Wh*Ww,nH
relative_position_bias = relative_position_bias.permute(2, 0, 1).contiguous() # nH, Wh*Ww, Wh*Ww
attn = attn + relative_position_bias.unsqueeze(0)
if rel_pos_bias is not None:
attn = attn + rel_pos_bias
attn = attn.softmax(dim=-1)
attn = self.attn_drop(attn)
x = (attn @ v).transpose(1, 2).reshape(B, N, -1)
x = self.proj(x)
x = self.proj_drop(x)
return x
class Block(nn.Module):
def __init__(self, dim, num_heads, mlp_ratio=4., qkv_bias=False, qk_scale=None, drop=0., attn_drop=0.,
drop_path=0., init_values=None, act_layer=nn.GELU, norm_layer=nn.LayerNorm,
window_size=None, attn_head_dim=None):
super().__init__()
self.norm1 = norm_layer(dim)
self.attn = Attention(
dim, num_heads=num_heads, qkv_bias=qkv_bias, qk_scale=qk_scale,
attn_drop=attn_drop, proj_drop=drop, window_size=window_size, attn_head_dim=attn_head_dim)
# NOTE: drop path for stochastic depth, we shall see if this is better than dropout here
self.drop_path = DropPath(drop_path) if drop_path > 0. else nn.Identity()
self.norm2 = norm_layer(dim)
mlp_hidden_dim = int(dim * mlp_ratio)
self.mlp = Mlp(in_features=dim, hidden_features=mlp_hidden_dim, act_layer=act_layer, drop=drop)
if init_values is not None:
self.gamma_1 = nn.Parameter(init_values * torch.ones((dim)), requires_grad=True)
self.gamma_2 = nn.Parameter(init_values * torch.ones((dim)), requires_grad=True)
else:
self.gamma_1, self.gamma_2 = None, None
def forward(self, x, rel_pos_bias=None, training_window_size=None):
if self.gamma_1 is None:
x = x + self.drop_path(
self.attn(self.norm1(x), rel_pos_bias=rel_pos_bias, training_window_size=training_window_size))
x = x + self.drop_path(self.mlp(self.norm2(x)))
else:
x = x + self.drop_path(self.gamma_1 * self.attn(self.norm1(x), rel_pos_bias=rel_pos_bias,
training_window_size=training_window_size))
x = x + self.drop_path(self.gamma_2 * self.mlp(self.norm2(x)))
return x
class PatchEmbed(nn.Module):
""" Image to Patch Embedding
"""
def __init__(self, img_size=[224, 224], patch_size=16, in_chans=3, embed_dim=768):
super().__init__()
img_size = to_2tuple(img_size)
patch_size = to_2tuple(patch_size)
num_patches = (img_size[1] // patch_size[1]) * (img_size[0] // patch_size[0])
self.patch_shape = (img_size[0] // patch_size[0], img_size[1] // patch_size[1])
self.num_patches_w = self.patch_shape[0]
self.num_patches_h = self.patch_shape[1]
# the so-called patch_shape is the patch shape during pre-training
self.img_size = img_size
self.patch_size = patch_size
self.num_patches = num_patches
self.proj = nn.Conv2d(in_chans, embed_dim, kernel_size=patch_size, stride=patch_size)
def forward(self, x, position_embedding=None, **kwargs):
# FIXME look at relaxing size constraints
# assert H == self.img_size[0] and W == self.img_size[1], \
# f"Input image size ({H}*{W}) doesn't match model ({self.img_size[0]}*{self.img_size[1]})."
x = self.proj(x)
Hp, Wp = x.shape[2], x.shape[3]
if position_embedding is not None:
# interpolate the position embedding to the corresponding size
position_embedding = position_embedding.view(1, self.patch_shape[0], self.patch_shape[1], -1).permute(0, 3,
1, 2)
position_embedding = F.interpolate(position_embedding, size=(Hp, Wp), mode='bicubic')
x = x + position_embedding
x = x.flatten(2).transpose(1, 2)
return x, (Hp, Wp)
class HybridEmbed(nn.Module):
""" CNN Feature Map Embedding
Extract feature map from CNN, flatten, project to embedding dim.
"""
def __init__(self, backbone, img_size=[224, 224], feature_size=None, in_chans=3, embed_dim=768):
super().__init__()
assert isinstance(backbone, nn.Module)
img_size = to_2tuple(img_size)
self.img_size = img_size
self.backbone = backbone
if feature_size is None:
with torch.no_grad():
# FIXME this is hacky, but most reliable way of determining the exact dim of the output feature
# map for all networks, the feature metadata has reliable channel and stride info, but using
# stride to calc feature dim requires info about padding of each stage that isn't captured.
training = backbone.training
if training:
backbone.eval()
o = self.backbone(torch.zeros(1, in_chans, img_size[0], img_size[1]))[-1]
feature_size = o.shape[-2:]
feature_dim = o.shape[1]
backbone.train(training)
else:
feature_size = to_2tuple(feature_size)
feature_dim = self.backbone.feature_info.channels()[-1]
self.num_patches = feature_size[0] * feature_size[1]
self.proj = nn.Linear(feature_dim, embed_dim)
def forward(self, x):
x = self.backbone(x)[-1]
x = x.flatten(2).transpose(1, 2)
x = self.proj(x)
return x
class RelativePositionBias(nn.Module):
def __init__(self, window_size, num_heads):
super().__init__()
self.window_size = window_size
self.num_heads = num_heads
self.num_relative_distance = (2 * window_size[0] - 1) * (2 * window_size[1] - 1) + 3
self.relative_position_bias_table = nn.Parameter(
torch.zeros(self.num_relative_distance, num_heads)) # 2*Wh-1 * 2*Ww-1, nH
# cls to token & token 2 cls & cls to cls
# get pair-wise relative position index for each token inside the window
coords_h = torch.arange(window_size[0])
coords_w = torch.arange(window_size[1])
coords = torch.stack(torch.meshgrid([coords_h, coords_w])) # 2, Wh, Ww
coords_flatten = torch.flatten(coords, 1) # 2, Wh*Ww
relative_coords = coords_flatten[:, :, None] - coords_flatten[:, None, :] # 2, Wh*Ww, Wh*Ww
relative_coords = relative_coords.permute(1, 2, 0).contiguous() # Wh*Ww, Wh*Ww, 2
relative_coords[:, :, 0] += window_size[0] - 1 # shift to start from 0
relative_coords[:, :, 1] += window_size[1] - 1
relative_coords[:, :, 0] *= 2 * window_size[1] - 1
relative_position_index = \
torch.zeros(size=(window_size[0] * window_size[1] + 1,) * 2, dtype=relative_coords.dtype)
relative_position_index[1:, 1:] = relative_coords.sum(-1) # Wh*Ww, Wh*Ww
relative_position_index[0, 0:] = self.num_relative_distance - 3
relative_position_index[0:, 0] = self.num_relative_distance - 2
relative_position_index[0, 0] = self.num_relative_distance - 1
self.register_buffer("relative_position_index", relative_position_index)
# trunc_normal_(self.relative_position_bias_table, std=.02)
def forward(self, training_window_size):
if training_window_size == self.window_size:
relative_position_bias = \
self.relative_position_bias_table[self.relative_position_index.view(-1)].view(
self.window_size[0] * self.window_size[1] + 1,
self.window_size[0] * self.window_size[1] + 1, -1) # Wh*Ww,Wh*Ww,nH
relative_position_bias = relative_position_bias.permute(2, 0, 1).contiguous() # nH, Wh*Ww, Wh*Ww
else:
training_window_size = tuple(training_window_size.tolist())
new_num_relative_distance = (2 * training_window_size[0] - 1) * (2 * training_window_size[1] - 1) + 3
# new_num_relative_dis 为 所有可能的相对位置选项，包含cls-cls，tok-cls，与cls-tok
new_relative_position_bias_table = F.interpolate(
self.relative_position_bias_table[:-3, :].permute(1, 0).view(1, self.num_heads,
2 * self.window_size[0] - 1,
2 * self.window_size[1] - 1),
size=(2 * training_window_size[0] - 1, 2 * training_window_size[1] - 1), mode='bicubic',
align_corners=False)
new_relative_position_bias_table = new_relative_position_bias_table.view(self.num_heads,
new_num_relative_distance - 3).permute(
1, 0)
new_relative_position_bias_table = torch.cat(
[new_relative_position_bias_table, self.relative_position_bias_table[-3::]], dim=0)
# get pair-wise relative position index for each token inside the window
coords_h = torch.arange(training_window_size[0])
coords_w = torch.arange(training_window_size[1])
coords = torch.stack(torch.meshgrid([coords_h, coords_w])) # 2, Wh, Ww
coords_flatten = torch.flatten(coords, 1) # 2, Wh*Ww
relative_coords = coords_flatten[:, :, None] - coords_flatten[:, None, :] # 2, Wh*Ww, Wh*Ww
relative_coords = relative_coords.permute(1, 2, 0).contiguous() # Wh*Ww, Wh*Ww, 2
relative_coords[:, :, 0] += training_window_size[0] - 1 # shift to start from 0
relative_coords[:, :, 1] += training_window_size[1] - 1
relative_coords[:, :, 0] *= 2 * training_window_size[1] - 1
relative_position_index = \
torch.zeros(size=(training_window_size[0] * training_window_size[1] + 1,) * 2,
dtype=relative_coords.dtype)
relative_position_index[1:, 1:] = relative_coords.sum(-1) # Wh*Ww, Wh*Ww
relative_position_index[0, 0:] = new_num_relative_distance - 3
relative_position_index[0:, 0] = new_num_relative_distance - 2
relative_position_index[0, 0] = new_num_relative_distance - 1
relative_position_bias = \
new_relative_position_bias_table[relative_position_index.view(-1)].view(
training_window_size[0] * training_window_size[1] + 1,
training_window_size[0] * training_window_size[1] + 1, -1) # Wh*Ww,Wh*Ww,nH
relative_position_bias = relative_position_bias.permute(2, 0, 1).contiguous() # nH, Wh*Ww, Wh*Ww
return relative_position_bias
class BEiT(nn.Module):
""" Vision Transformer with support for patch or hybrid CNN input stage
"""
def __init__(self,
img_size=[224, 224],
patch_size=16,
in_chans=3,
num_classes=80,
embed_dim=768,
depth=12,
num_heads=12,
mlp_ratio=4.,
qkv_bias=False,
qk_scale=None,
drop_rate=0.,
attn_drop_rate=0.,
drop_path_rate=0.,
hybrid_backbone=None,
norm_layer=None,
init_values=None,
use_abs_pos_emb=False,
use_rel_pos_bias=False,
use_shared_rel_pos_bias=False,
use_checkpoint=True,
pretrained=None,
out_features=None,
):
super(BEiT, self).__init__()
norm_layer = norm_layer or partial(nn.LayerNorm, eps=1e-6)
self.num_classes = num_classes
self.num_features = self.embed_dim = embed_dim # num_features for consistency with other models
self.use_checkpoint = use_checkpoint
if hybrid_backbone is not None:
self.patch_embed = HybridEmbed(
hybrid_backbone, img_size=img_size, in_chans=in_chans, embed_dim=embed_dim)
else:
self.patch_embed = PatchEmbed(
img_size=img_size, patch_size=patch_size, in_chans=in_chans, embed_dim=embed_dim)
num_patches = self.patch_embed.num_patches
self.out_features = out_features
self.out_indices = [int(name[5:]) for name in out_features]
self.cls_token = nn.Parameter(torch.zeros(1, 1, embed_dim))
# self.mask_token = nn.Parameter(torch.zeros(1, 1, embed_dim))
if use_abs_pos_emb:
self.pos_embed = nn.Parameter(torch.zeros(1, num_patches + 1, embed_dim))
else:
self.pos_embed = None
self.pos_drop = nn.Dropout(p=drop_rate)
self.use_shared_rel_pos_bias = use_shared_rel_pos_bias
if use_shared_rel_pos_bias:
self.rel_pos_bias = RelativePositionBias(window_size=self.patch_embed.patch_shape, num_heads=num_heads)
else:
self.rel_pos_bias = None
dpr = [x.item() for x in torch.linspace(0, drop_path_rate, depth)] # stochastic depth decay rule
self.use_rel_pos_bias = use_rel_pos_bias
self.blocks = nn.ModuleList([
Block(
dim=embed_dim, num_heads=num_heads, mlp_ratio=mlp_ratio, qkv_bias=qkv_bias, qk_scale=qk_scale,
drop=drop_rate, attn_drop=attn_drop_rate, drop_path=dpr[i], norm_layer=norm_layer,
init_values=init_values, window_size=self.patch_embed.patch_shape if use_rel_pos_bias else None)
for i in range(depth)])
# trunc_normal_(self.mask_token, std=.02)
if patch_size == 16:
self.fpn1 = nn.Sequential(
nn.ConvTranspose2d(embed_dim, embed_dim, kernel_size=2, stride=2),
# nn.SyncBatchNorm(embed_dim),
nn.BatchNorm2d(embed_dim),
nn.GELU(),
nn.ConvTranspose2d(embed_dim, embed_dim, kernel_size=2, stride=2),
)
self.fpn2 = nn.Sequential(
nn.ConvTranspose2d(embed_dim, embed_dim, kernel_size=2, stride=2),
)
self.fpn3 = nn.Identity()
self.fpn4 = nn.MaxPool2d(kernel_size=2, stride=2)
elif patch_size == 8:
self.fpn1 = nn.Sequential(
nn.ConvTranspose2d(embed_dim, embed_dim, kernel_size=2, stride=2),
)
self.fpn2 = nn.Identity()
self.fpn3 = nn.Sequential(
nn.MaxPool2d(kernel_size=2, stride=2),
)
self.fpn4 = nn.Sequential(
nn.MaxPool2d(kernel_size=4, stride=4),
)
if self.pos_embed is not None:
trunc_normal_(self.pos_embed, std=.02)
trunc_normal_(self.cls_token, std=.02)
self.apply(self._init_weights)
self.fix_init_weight()
def fix_init_weight(self):
def rescale(param, layer_id):
param.div_(math.sqrt(2.0 * layer_id))
for layer_id, layer in enumerate(self.blocks):
rescale(layer.attn.proj.weight.data, layer_id + 1)
rescale(layer.mlp.fc2.weight.data, layer_id + 1)
def _init_weights(self, m):
if isinstance(m, nn.Linear):
trunc_normal_(m.weight, std=.02)
if isinstance(m, nn.Linear) and m.bias is not None:
nn.init.constant_(m.bias, 0)
elif isinstance(m, nn.LayerNorm):
nn.init.constant_(m.bias, 0)
nn.init.constant_(m.weight, 1.0)
'''
def init_weights(self):
"""Initialize the weights in backbone.
Args:
pretrained (str, optional): Path to pre-trained weights.
Defaults to None.
"""
logger = get_root_logger()
if self.pos_embed is not None:
trunc_normal_(self.pos_embed, std=.02)
trunc_normal_(self.cls_token, std=.02)
self.apply(self._init_weights)
self.fix_init_weight()
if self.init_cfg is None:
logger.warn(f'No pre-trained weights for '
f'{self.__class__.__name__}, '
f'training start from scratch')
else:
assert 'checkpoint' in self.init_cfg, f'Only support ' \
f'specify `Pretrained` in ' \
f'`init_cfg` in ' \
f'{self.__class__.__name__} '
logger.info(f"Will load ckpt from {self.init_cfg['checkpoint']}")
load_checkpoint(self,
filename=self.init_cfg['checkpoint'],
strict=False,
logger=logger,
beit_spec_expand_rel_pos = self.use_rel_pos_bias,
)
'''
def get_num_layers(self):
return len(self.blocks)
@torch.jit.ignore
def no_weight_decay(self):
return {'pos_embed', 'cls_token'}
def forward_features(self, x):
B, C, H, W = x.shape
x, (Hp, Wp) = self.patch_embed(x, self.pos_embed[:, 1:, :] if self.pos_embed is not None else None)
# Hp, Wp are HW for patches
batch_size, seq_len, _ = x.size()
cls_tokens = self.cls_token.expand(batch_size, -1, -1) # stole cls_tokens impl from Phil Wang, thanks
if self.pos_embed is not None:
cls_tokens = cls_tokens + self.pos_embed[:, :1, :]
x = torch.cat((cls_tokens, x), dim=1)
x = self.pos_drop(x)
features = []
training_window_size = torch.tensor([Hp, Wp])
rel_pos_bias = self.rel_pos_bias(training_window_size) if self.rel_pos_bias is not None else None
for i, blk in enumerate(self.blocks):
if self.use_checkpoint:
x = checkpoint.checkpoint(blk, x, rel_pos_bias, training_window_size)
else:
x = blk(x, rel_pos_bias=rel_pos_bias, training_window_size=training_window_size)
if i in self.out_indices:
xp = x[:, 1:, :].permute(0, 2, 1).reshape(B, -1, Hp, Wp)
features.append(xp.contiguous())
ops = [self.fpn1, self.fpn2, self.fpn3, self.fpn4]
for i in range(len(features)):
features[i] = ops[i](features[i])
feat_out = {}
for name, value in zip(self.out_features, features):
feat_out[name] = value
return feat_out
def forward(self, x):
x = self.forward_features(x)
return x
def beit_base_patch16(pretrained=False, **kwargs):
model = BEiT(
patch_size=16,
embed_dim=768,
depth=12,
num_heads=12,
mlp_ratio=4,
qkv_bias=True,
norm_layer=partial(nn.LayerNorm, eps=1e-6),
init_values=None,
**kwargs)
model.default_cfg = _cfg()
return model
def beit_large_patch16(pretrained=False, **kwargs):
model = BEiT(
patch_size=16,
embed_dim=1024,
depth=24,
num_heads=16,
mlp_ratio=4,
qkv_bias=True,
norm_layer=partial(nn.LayerNorm, eps=1e-6),
init_values=None,
**kwargs)
model.default_cfg = _cfg()
return model
def dit_base_patch16(pretrained=False, **kwargs):
model = BEiT(
patch_size=16,
embed_dim=768,
depth=12,
num_heads=12,
mlp_ratio=4,
qkv_bias=True,
norm_layer=partial(nn.LayerNorm, eps=1e-6),
init_values=0.1,
**kwargs)
model.default_cfg = _cfg()
return model
def dit_large_patch16(pretrained=False, **kwargs):
model = BEiT(
patch_size=16,
embed_dim=1024,
depth=24,
num_heads=16,
mlp_ratio=4,
qkv_bias=True,
norm_layer=partial(nn.LayerNorm, eps=1e-6),
init_values=1e-5,
**kwargs)
model.default_cfg = _cfg()
return model
if __name__ == '__main__':
model = BEiT(use_checkpoint=True, use_shared_rel_pos_bias=True)
model = model.to("cuda:0")
input1 = torch.rand(2, 3, 512, 762).to("cuda:0")
input2 = torch.rand(2, 3, 800, 1200).to("cuda:0")
input3 = torch.rand(2, 3, 720, 1000).to("cuda:0")
output1 = model(input1)
output2 = model(input2)
output3 = model(input3)
print("all done")
magic_pdf/model/pek_sub_modules/layoutlmv3/deit.py 0 → 100644
View file @ 1fac6aa7
"""
Mostly copy-paste from DINO and timm library:
https://github.com/facebookresearch/dino
https://github.com/rwightman/pytorch-image-models/blob/master/timm/models/vision_transformer.py
"""
import warnings
import math
import torch
import torch.nn as nn
import torch.utils.checkpoint as checkpoint
from timm.models.layers import trunc_normal_, drop_path, to_2tuple
from functools import partial
def _cfg(url='', **kwargs):
return {
'url': url,
'num_classes': 1000, 'input_size': (3, 224, 224), 'pool_size': None,
'crop_pct': .9, 'interpolation': 'bicubic',
'mean': (0.5, 0.5, 0.5), 'std': (0.5, 0.5, 0.5),
**kwargs
}
class DropPath(nn.Module):
"""Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks).
"""
def __init__(self, drop_prob=None):
super(DropPath, self).__init__()
self.drop_prob = drop_prob
def forward(self, x):
return drop_path(x, self.drop_prob, self.training)
def extra_repr(self) -> str:
return 'p={}'.format(self.drop_prob)
class Mlp(nn.Module):
def __init__(self, in_features, hidden_features=None, out_features=None, act_layer=nn.GELU, drop=0.):
super().__init__()
out_features = out_features or in_features
hidden_features = hidden_features or in_features
self.fc1 = nn.Linear(in_features, hidden_features)
self.act = act_layer()
self.fc2 = nn.Linear(hidden_features, out_features)
self.drop = nn.Dropout(drop)
def forward(self, x):
x = self.fc1(x)
x = self.act(x)
x = self.drop(x)
x = self.fc2(x)
x = self.drop(x)
return x
class Attention(nn.Module):
def __init__(self, dim, num_heads=8, qkv_bias=False, qk_scale=None, attn_drop=0., proj_drop=0.):
super().__init__()
self.num_heads = num_heads
head_dim = dim // num_heads
# NOTE scale factor was wrong in my original version, can set manually to be compat with prev weights
self.scale = qk_scale or head_dim ** -0.5
self.qkv = nn.Linear(dim, dim * 3, bias=qkv_bias)
self.attn_drop = nn.Dropout(attn_drop)
self.proj = nn.Linear(dim, dim)
self.proj_drop = nn.Dropout(proj_drop)
def forward(self, x):
B, N, C = x.shape
q, k, v = self.qkv(x).reshape(B, N, 3, self.num_heads,
C // self.num_heads).permute(2, 0, 3, 1, 4)
attn = (q @ k.transpose(-2, -1)) * self.scale
attn = attn.softmax(dim=-1)
attn = self.attn_drop(attn)
x = (attn @ v).transpose(1, 2).reshape(B, N, C)
x = self.proj(x)
x = self.proj_drop(x)
return x
class Block(nn.Module):
def __init__(self, dim, num_heads, mlp_ratio=4., qkv_bias=False, qk_scale=None, drop=0., attn_drop=0.,
drop_path=0., act_layer=nn.GELU, norm_layer=nn.LayerNorm):
super().__init__()
self.norm1 = norm_layer(dim)
self.attn = Attention(
dim, num_heads=num_heads, qkv_bias=qkv_bias, qk_scale=qk_scale, attn_drop=attn_drop, proj_drop=drop)
# NOTE: drop path for stochastic depth, we shall see if this is better than dropout here
self.drop_path = DropPath(
drop_path) if drop_path > 0. else nn.Identity()
self.norm2 = norm_layer(dim)
mlp_hidden_dim = int(dim * mlp_ratio)
self.mlp = Mlp(in_features=dim, hidden_features=mlp_hidden_dim,
act_layer=act_layer, drop=drop)
def forward(self, x):
x = x + self.drop_path(self.attn(self.norm1(x)))
x = x + self.drop_path(self.mlp(self.norm2(x)))
return x
class PatchEmbed(nn.Module):
""" Image to Patch Embedding
"""
def __init__(self, img_size=224, patch_size=16, in_chans=3, embed_dim=768):
super().__init__()
img_size = to_2tuple(img_size)
patch_size = to_2tuple(patch_size)
self.window_size = (img_size[0] // patch_size[0], img_size[1] // patch_size[1])
self.num_patches_w, self.num_patches_h = self.window_size
self.num_patches = self.window_size[0] * self.window_size[1]
self.img_size = img_size
self.patch_size = patch_size
self.proj = nn.Conv2d(in_chans, embed_dim,
kernel_size=patch_size, stride=patch_size)
def forward(self, x):
x = self.proj(x)
return x
class HybridEmbed(nn.Module):
""" CNN Feature Map Embedding
Extract feature map from CNN, flatten, project to embedding dim.
"""
def __init__(self, backbone, img_size=224, feature_size=None, in_chans=3, embed_dim=768):
super().__init__()
assert isinstance(backbone, nn.Module)
img_size = to_2tuple(img_size)
self.img_size = img_size
self.backbone = backbone
if feature_size is None:
with torch.no_grad():
# FIXME this is hacky, but most reliable way of determining the exact dim of the output feature
# map for all networks, the feature metadata has reliable channel and stride info, but using
# stride to calc feature dim requires info about padding of each stage that isn't captured.
training = backbone.training
if training:
backbone.eval()
o = self.backbone(torch.zeros(
1, in_chans, img_size[0], img_size[1]))[-1]
feature_size = o.shape[-2:]
feature_dim = o.shape[1]
backbone.train(training)
else:
feature_size = to_2tuple(feature_size)
feature_dim = self.backbone.feature_info.channels()[-1]
self.num_patches = feature_size[0] * feature_size[1]
self.proj = nn.Linear(feature_dim, embed_dim)
def forward(self, x):
x = self.backbone(x)[-1]
x = x.flatten(2).transpose(1, 2)
x = self.proj(x)
return x
class ViT(nn.Module):
""" Vision Transformer with support for patch or hybrid CNN input stage
"""
def __init__(self,
model_name='vit_base_patch16_224',
img_size=384,
patch_size=16,
in_chans=3,
embed_dim=1024,
depth=24,
num_heads=16,
num_classes=19,
mlp_ratio=4.,
qkv_bias=True,
qk_scale=None,
drop_rate=0.1,
attn_drop_rate=0.,
drop_path_rate=0.,
hybrid_backbone=None,
norm_layer=partial(nn.LayerNorm, eps=1e-6),
norm_cfg=None,
pos_embed_interp=False,
random_init=False,
align_corners=False,
use_checkpoint=False,
num_extra_tokens=1,
out_features=None,
**kwargs,
):
super(ViT, self).__init__()
self.model_name = model_name
self.img_size = img_size
self.patch_size = patch_size
self.in_chans = in_chans
self.embed_dim = embed_dim
self.depth = depth
self.num_heads = num_heads
self.num_classes = num_classes
self.mlp_ratio = mlp_ratio
self.qkv_bias = qkv_bias
self.qk_scale = qk_scale
self.drop_rate = drop_rate
self.attn_drop_rate = attn_drop_rate
self.drop_path_rate = drop_path_rate
self.hybrid_backbone = hybrid_backbone
self.norm_layer = norm_layer
self.norm_cfg = norm_cfg
self.pos_embed_interp = pos_embed_interp
self.random_init = random_init
self.align_corners = align_corners
self.use_checkpoint = use_checkpoint
self.num_extra_tokens = num_extra_tokens
self.out_features = out_features
self.out_indices = [int(name[5:]) for name in out_features]
# self.num_stages = self.depth
# self.out_indices = tuple(range(self.num_stages))
if self.hybrid_backbone is not None:
self.patch_embed = HybridEmbed(
self.hybrid_backbone, img_size=self.img_size, in_chans=self.in_chans, embed_dim=self.embed_dim)
else:
self.patch_embed = PatchEmbed(
img_size=self.img_size, patch_size=self.patch_size, in_chans=self.in_chans, embed_dim=self.embed_dim)
self.num_patches = self.patch_embed.num_patches
self.cls_token = nn.Parameter(torch.zeros(1, 1, self.embed_dim))
if self.num_extra_tokens == 2:
self.dist_token = nn.Parameter(torch.zeros(1, 1, self.embed_dim))
self.pos_embed = nn.Parameter(torch.zeros(
1, self.num_patches + self.num_extra_tokens, self.embed_dim))
self.pos_drop = nn.Dropout(p=self.drop_rate)
# self.num_extra_tokens = self.pos_embed.shape[-2] - self.num_patches
dpr = [x.item() for x in torch.linspace(0, self.drop_path_rate,
self.depth)] # stochastic depth decay rule
self.blocks = nn.ModuleList([
Block(
dim=self.embed_dim, num_heads=self.num_heads, mlp_ratio=self.mlp_ratio, qkv_bias=self.qkv_bias,
qk_scale=self.qk_scale,
drop=self.drop_rate, attn_drop=self.attn_drop_rate, drop_path=dpr[i], norm_layer=self.norm_layer)
for i in range(self.depth)])
# NOTE as per official impl, we could have a pre-logits representation dense layer + tanh here
# self.repr = nn.Linear(embed_dim, representation_size)
# self.repr_act = nn.Tanh()
if patch_size == 16:
self.fpn1 = nn.Sequential(
nn.ConvTranspose2d(embed_dim, embed_dim, kernel_size=2, stride=2),
nn.SyncBatchNorm(embed_dim),
nn.GELU(),
nn.ConvTranspose2d(embed_dim, embed_dim, kernel_size=2, stride=2),
)
self.fpn2 = nn.Sequential(
nn.ConvTranspose2d(embed_dim, embed_dim, kernel_size=2, stride=2),
)
self.fpn3 = nn.Identity()
self.fpn4 = nn.MaxPool2d(kernel_size=2, stride=2)
elif patch_size == 8:
self.fpn1 = nn.Sequential(
nn.ConvTranspose2d(embed_dim, embed_dim, kernel_size=2, stride=2),
)
self.fpn2 = nn.Identity()
self.fpn3 = nn.Sequential(
nn.MaxPool2d(kernel_size=2, stride=2),
)
self.fpn4 = nn.Sequential(
nn.MaxPool2d(kernel_size=4, stride=4),
)
trunc_normal_(self.pos_embed, std=.02)
trunc_normal_(self.cls_token, std=.02)
if self.num_extra_tokens==2:
trunc_normal_(self.dist_token, std=0.2)
self.apply(self._init_weights)
# self.fix_init_weight()
def fix_init_weight(self):
def rescale(param, layer_id):
param.div_(math.sqrt(2.0 * layer_id))
for layer_id, layer in enumerate(self.blocks):
rescale(layer.attn.proj.weight.data, layer_id + 1)
rescale(layer.mlp.fc2.weight.data, layer_id + 1)
def _init_weights(self, m):
if isinstance(m, nn.Linear):
trunc_normal_(m.weight, std=.02)
if isinstance(m, nn.Linear) and m.bias is not None:
nn.init.constant_(m.bias, 0)
elif isinstance(m, nn.LayerNorm):
nn.init.constant_(m.bias, 0)
nn.init.constant_(m.weight, 1.0)
'''
def init_weights(self):
logger = get_root_logger()
trunc_normal_(self.pos_embed, std=.02)
trunc_normal_(self.cls_token, std=.02)
self.apply(self._init_weights)
if self.init_cfg is None:
logger.warn(f'No pre-trained weights for '
f'{self.__class__.__name__}, '
f'training start from scratch')
else:
assert 'checkpoint' in self.init_cfg, f'Only support ' \
f'specify `Pretrained` in ' \
f'`init_cfg` in ' \
f'{self.__class__.__name__} '
logger.info(f"Will load ckpt from {self.init_cfg['checkpoint']}")
load_checkpoint(self, filename=self.init_cfg['checkpoint'], strict=False, logger=logger)
'''
def get_num_layers(self):
return len(self.blocks)
@torch.jit.ignore
def no_weight_decay(self):
return {'pos_embed', 'cls_token'}
def _conv_filter(self, state_dict, patch_size=16):
""" convert patch embedding weight from manual patchify + linear proj to conv"""
out_dict = {}
for k, v in state_dict.items():
if 'patch_embed.proj.weight' in k:
v = v.reshape((v.shape[0], 3, patch_size, patch_size))
out_dict[k] = v
return out_dict
def to_2D(self, x):
n, hw, c = x.shape
h = w = int(math.sqrt(hw))
x = x.transpose(1, 2).reshape(n, c, h, w)
return x
def to_1D(self, x):
n, c, h, w = x.shape
x = x.reshape(n, c, -1).transpose(1, 2)
return x
def interpolate_pos_encoding(self, x, w, h):
npatch = x.shape[1] - self.num_extra_tokens
N = self.pos_embed.shape[1] - self.num_extra_tokens
if npatch == N and w == h:
return self.pos_embed
class_ORdist_pos_embed = self.pos_embed[:, 0:self.num_extra_tokens]
patch_pos_embed = self.pos_embed[:, self.num_extra_tokens:]
dim = x.shape[-1]
w0 = w // self.patch_embed.patch_size[0]
h0 = h // self.patch_embed.patch_size[1]
# we add a small number to avoid floating point error in the interpolation
# see discussion at https://github.com/facebookresearch/dino/issues/8
w0, h0 = w0 + 0.1, h0 + 0.1
patch_pos_embed = nn.functional.interpolate(
patch_pos_embed.reshape(1, int(math.sqrt(N)), int(math.sqrt(N)), dim).permute(0, 3, 1, 2),
scale_factor=(w0 / math.sqrt(N), h0 / math.sqrt(N)),
mode='bicubic',
)
assert int(w0) == patch_pos_embed.shape[-2] and int(h0) == patch_pos_embed.shape[-1]
patch_pos_embed = patch_pos_embed.permute(0, 2, 3, 1).view(1, -1, dim)
return torch.cat((class_ORdist_pos_embed, patch_pos_embed), dim=1)
def prepare_tokens(self, x, mask=None):
B, nc, w, h = x.shape
# patch linear embedding
x = self.patch_embed(x)
# mask image modeling
if mask is not None:
x = self.mask_model(x, mask)
x = x.flatten(2).transpose(1, 2)
# add the [CLS] token to the embed patch tokens
all_tokens = [self.cls_token.expand(B, -1, -1)]
if self.num_extra_tokens == 2:
dist_tokens = self.dist_token.expand(B, -1, -1)
all_tokens.append(dist_tokens)
all_tokens.append(x)
x = torch.cat(all_tokens, dim=1)
# add positional encoding to each token
x = x + self.interpolate_pos_encoding(x, w, h)
return self.pos_drop(x)
def forward_features(self, x):
# print(f"==========shape of x is {x.shape}==========")
B, _, H, W = x.shape
Hp, Wp = H // self.patch_size, W // self.patch_size
x = self.prepare_tokens(x)
features = []
for i, blk in enumerate(self.blocks):
if self.use_checkpoint:
x = checkpoint.checkpoint(blk, x)
else:
x = blk(x)
if i in self.out_indices:
xp = x[:, self.num_extra_tokens:, :].permute(0, 2, 1).reshape(B, -1, Hp, Wp)
features.append(xp.contiguous())
ops = [self.fpn1, self.fpn2, self.fpn3, self.fpn4]
for i in range(len(features)):
features[i] = ops[i](features[i])
feat_out = {}
for name, value in zip(self.out_features, features):
feat_out[name] = value
return feat_out
def forward(self, x):
x = self.forward_features(x)
return x
def deit_base_patch16(pretrained=False, **kwargs):
model = ViT(
patch_size=16,
drop_rate=0.,
embed_dim=768,
depth=12,
num_heads=12,
num_classes=1000,
mlp_ratio=4.,
qkv_bias=True,
use_checkpoint=True,
num_extra_tokens=2,
**kwargs)
model.default_cfg = _cfg()
return model
def mae_base_patch16(pretrained=False, **kwargs):
model = ViT(
patch_size=16,
drop_rate=0.,
embed_dim=768,
depth=12,
num_heads=12,
num_classes=1000,
mlp_ratio=4.,
qkv_bias=True,
use_checkpoint=True,
num_extra_tokens=1,
**kwargs)
model.default_cfg = _cfg()
return model
\ No newline at end of file
magic_pdf/model/pek_sub_modules/layoutlmv3/layoutlmft/__init__.py 0 → 100644
View file @ 1fac6aa7
from .models import (
LayoutLMv3Config,
LayoutLMv3ForTokenClassification,
LayoutLMv3ForQuestionAnswering,
LayoutLMv3ForSequenceClassification,
LayoutLMv3Tokenizer,
)
magic_pdf/model/pek_sub_modules/layoutlmv3/layoutlmft/data/__init__.py 0 → 100644
View file @ 1fac6aa7
# flake8: noqa
from .data_collator import DataCollatorForKeyValueExtraction
magic_pdf/model/pek_sub_modules/layoutlmv3/layoutlmft/data/cord.py 0 → 100644
View file @ 1fac6aa7
'''
Reference: https://huggingface.co/datasets/pierresi/cord/blob/main/cord.py
'''
import json
import os
from pathlib import Path
import datasets
from .image_utils import load_image, normalize_bbox
logger = datasets.logging.get_logger(__name__)
_CITATION = """\
@article{park2019cord,
title={CORD: A Consolidated Receipt Dataset for Post-OCR Parsing},
author={Park, Seunghyun and Shin, Seung and Lee, Bado and Lee, Junyeop and Surh, Jaeheung and Seo, Minjoon and Lee, Hwalsuk}
booktitle={Document Intelligence Workshop at Neural Information Processing Systems}
year={2019}
}
"""
_DESCRIPTION = """\
https://github.com/clovaai/cord/
"""
def quad_to_box(quad):
# test 87 is wrongly annotated
box = (
max(0, quad["x1"]),
max(0, quad["y1"]),
quad["x3"],
quad["y3"]
)
if box[3] < box[1]:
bbox = list(box)
tmp = bbox[3]
bbox[3] = bbox[1]
bbox[1] = tmp
box = tuple(bbox)
if box[2] < box[0]:
bbox = list(box)
tmp = bbox[2]
bbox[2] = bbox[0]
bbox[0] = tmp
box = tuple(bbox)
return box
def _get_drive_url(url):
base_url = 'https://drive.google.com/uc?id='
split_url = url.split('/')
return base_url + split_url[5]
_URLS = [
_get_drive_url("https://drive.google.com/file/d/1MqhTbcj-AHXOqYoeoh12aRUwIprzTJYI/"),
_get_drive_url("https://drive.google.com/file/d/1wYdp5nC9LnHQZ2FcmOoC0eClyWvcuARU/")
# If you failed to download the dataset through the automatic downloader,
# you can download it manually and modify the code to get the local dataset.
# Or you can use the following links. Please follow the original LICENSE of CORD for usage.
# "https://layoutlm.blob.core.windows.net/cord/CORD-1k-001.zip",
# "https://layoutlm.blob.core.windows.net/cord/CORD-1k-002.zip"
]
class CordConfig(datasets.BuilderConfig):
"""BuilderConfig for CORD"""
def __init__(self, **kwargs):
"""BuilderConfig for CORD.
Args:
**kwargs: keyword arguments forwarded to super.
"""
super(CordConfig, self).__init__(**kwargs)
class Cord(datasets.GeneratorBasedBuilder):
BUILDER_CONFIGS = [
CordConfig(name="cord", version=datasets.Version("1.0.0"), description="CORD dataset"),
]
def _info(self):
return datasets.DatasetInfo(
description=_DESCRIPTION,
features=datasets.Features(
{
"id": datasets.Value("string"),
"words": datasets.Sequence(datasets.Value("string")),
"bboxes": datasets.Sequence(datasets.Sequence(datasets.Value("int64"))),
"ner_tags": datasets.Sequence(
datasets.features.ClassLabel(
names=["O","B-MENU.NM","B-MENU.NUM","B-MENU.UNITPRICE","B-MENU.CNT","B-MENU.DISCOUNTPRICE","B-MENU.PRICE","B-MENU.ITEMSUBTOTAL","B-MENU.VATYN","B-MENU.ETC","B-MENU.SUB_NM","B-MENU.SUB_UNITPRICE","B-MENU.SUB_CNT","B-MENU.SUB_PRICE","B-MENU.SUB_ETC","B-VOID_MENU.NM","B-VOID_MENU.PRICE","B-SUB_TOTAL.SUBTOTAL_PRICE","B-SUB_TOTAL.DISCOUNT_PRICE","B-SUB_TOTAL.SERVICE_PRICE","B-SUB_TOTAL.OTHERSVC_PRICE","B-SUB_TOTAL.TAX_PRICE","B-SUB_TOTAL.ETC","B-TOTAL.TOTAL_PRICE","B-TOTAL.TOTAL_ETC","B-TOTAL.CASHPRICE","B-TOTAL.CHANGEPRICE","B-TOTAL.CREDITCARDPRICE","B-TOTAL.EMONEYPRICE","B-TOTAL.MENUTYPE_CNT","B-TOTAL.MENUQTY_CNT","I-MENU.NM","I-MENU.NUM","I-MENU.UNITPRICE","I-MENU.CNT","I-MENU.DISCOUNTPRICE","I-MENU.PRICE","I-MENU.ITEMSUBTOTAL","I-MENU.VATYN","I-MENU.ETC","I-MENU.SUB_NM","I-MENU.SUB_UNITPRICE","I-MENU.SUB_CNT","I-MENU.SUB_PRICE","I-MENU.SUB_ETC","I-VOID_MENU.NM","I-VOID_MENU.PRICE","I-SUB_TOTAL.SUBTOTAL_PRICE","I-SUB_TOTAL.DISCOUNT_PRICE","I-SUB_TOTAL.SERVICE_PRICE","I-SUB_TOTAL.OTHERSVC_PRICE","I-SUB_TOTAL.TAX_PRICE","I-SUB_TOTAL.ETC","I-TOTAL.TOTAL_PRICE","I-TOTAL.TOTAL_ETC","I-TOTAL.CASHPRICE","I-TOTAL.CHANGEPRICE","I-TOTAL.CREDITCARDPRICE","I-TOTAL.EMONEYPRICE","I-TOTAL.MENUTYPE_CNT","I-TOTAL.MENUQTY_CNT"]
)
),
"image": datasets.Array3D(shape=(3, 224, 224), dtype="uint8"),
"image_path": datasets.Value("string"),
}
),
supervised_keys=None,
citation=_CITATION,
homepage="https://github.com/clovaai/cord/",
)
def _split_generators(self, dl_manager):
"""Returns SplitGenerators."""
"""Uses local files located with data_dir"""
downloaded_file = dl_manager.download_and_extract(_URLS)
# move files from the second URL together with files from the first one.
dest = Path(downloaded_file[0])/"CORD"
for split in ["train", "dev", "test"]:
for file_type in ["image", "json"]:
if split == "test" and file_type == "json":
continue
files = (Path(downloaded_file[1])/"CORD"/split/file_type).iterdir()
for f in files:
os.rename(f, dest/split/file_type/f.name)
return [
datasets.SplitGenerator(
name=datasets.Split.TRAIN, gen_kwargs={"filepath": dest/"train"}
),
datasets.SplitGenerator(
name=datasets.Split.VALIDATION, gen_kwargs={"filepath": dest/"dev"}
),
datasets.SplitGenerator(
name=datasets.Split.TEST, gen_kwargs={"filepath": dest/"test"}
),
]
def get_line_bbox(self, bboxs):
x = [bboxs[i][j] for i in range(len(bboxs)) for j in range(0, len(bboxs[i]), 2)]
y = [bboxs[i][j] for i in range(len(bboxs)) for j in range(1, len(bboxs[i]), 2)]
x0, y0, x1, y1 = min(x), min(y), max(x), max(y)
assert x1 >= x0 and y1 >= y0
bbox = [[x0, y0, x1, y1] for _ in range(len(bboxs))]
return bbox
def _generate_examples(self, filepath):
logger.info("⏳ Generating examples from = %s", filepath)
ann_dir = os.path.join(filepath, "json")
img_dir = os.path.join(filepath, "image")
for guid, file in enumerate(sorted(os.listdir(ann_dir))):
words = []
bboxes = []
ner_tags = []
file_path = os.path.join(ann_dir, file)
with open(file_path, "r", encoding="utf8") as f:
data = json.load(f)
image_path = os.path.join(img_dir, file)
image_path = image_path.replace("json", "png")
image, size = load_image(image_path)
for item in data["valid_line"]:
cur_line_bboxes = []
line_words, label = item["words"], item["category"]
line_words = [w for w in line_words if w["text"].strip() != ""]
if len(line_words) == 0:
continue
if label == "other":
for w in line_words:
words.append(w["text"])
ner_tags.append("O")
cur_line_bboxes.append(normalize_bbox(quad_to_box(w["quad"]), size))
else:
words.append(line_words[0]["text"])
ner_tags.append("B-" + label.upper())
cur_line_bboxes.append(normalize_bbox(quad_to_box(line_words[0]["quad"]), size))
for w in line_words[1:]:
words.append(w["text"])
ner_tags.append("I-" + label.upper())
cur_line_bboxes.append(normalize_bbox(quad_to_box(w["quad"]), size))
# by default: --segment_level_layout 1
# if do not want to use segment_level_layout, comment the following line
cur_line_bboxes = self.get_line_bbox(cur_line_bboxes)
bboxes.extend(cur_line_bboxes)
# yield guid, {"id": str(guid), "words": words, "bboxes": bboxes, "ner_tags": ner_tags, "image": image}
yield guid, {"id": str(guid), "words": words, "bboxes": bboxes, "ner_tags": ner_tags,
"image": image, "image_path": image_path}
magic_pdf/model/pek_sub_modules/layoutlmv3/layoutlmft/data/data_collator.py 0 → 100644
View file @ 1fac6aa7
import torch
from dataclasses import dataclass
from typing import Any, Dict, List, Optional, Tuple, Union
from transformers import BatchEncoding, PreTrainedTokenizerBase
from transformers.data.data_collator import (
DataCollatorMixin,
_torch_collate_batch,
)
from transformers.file_utils import PaddingStrategy
from typing import NewType
InputDataClass = NewType("InputDataClass", Any)
def pre_calc_rel_mat(segment_ids):
valid_span = torch.zeros((segment_ids.shape[0], segment_ids.shape[1], segment_ids.shape[1]),
device=segment_ids.device, dtype=torch.bool)
for i in range(segment_ids.shape[0]):
for j in range(segment_ids.shape[1]):
valid_span[i, j, :] = segment_ids[i, :] == segment_ids[i, j]
return valid_span
@dataclass
class DataCollatorForKeyValueExtraction(DataCollatorMixin):
"""
Data collator that will dynamically pad the inputs received, as well as the labels.
Args:
tokenizer (:class:`~transformers.PreTrainedTokenizer` or :class:`~transformers.PreTrainedTokenizerFast`):
The tokenizer used for encoding the data.
padding (:obj:`bool`, :obj:`str` or :class:`~transformers.file_utils.PaddingStrategy`, `optional`, defaults to :obj:`True`):
Select a strategy to pad the returned sequences (according to the model's padding side and padding index)
among:
* :obj:`True` or :obj:`'longest'`: Pad to the longest sequence in the batch (or no padding if only a single
sequence if provided).
* :obj:`'max_length'`: Pad to a maximum length specified with the argument :obj:`max_length` or to the
maximum acceptable input length for the model if that argument is not provided.
* :obj:`False` or :obj:`'do_not_pad'` (default): No padding (i.e., can output a batch with sequences of
different lengths).
max_length (:obj:`int`, `optional`):
Maximum length of the returned list and optionally padding length (see above).
pad_to_multiple_of (:obj:`int`, `optional`):
If set will pad the sequence to a multiple of the provided value.
This is especially useful to enable the use of Tensor Cores on NVIDIA hardware with compute capability >=
7.5 (Volta).
label_pad_token_id (:obj:`int`, `optional`, defaults to -100):
The id to use when padding the labels (-100 will be automatically ignore by PyTorch loss functions).
"""
tokenizer: PreTrainedTokenizerBase
padding: Union[bool, str, PaddingStrategy] = True
max_length: Optional[int] = None
pad_to_multiple_of: Optional[int] = None
label_pad_token_id: int = -100
def __call__(self, features):
label_name = "label" if "label" in features[0].keys() else "labels"
labels = [feature[label_name] for feature in features] if label_name in features[0].keys() else None
images = None
if "images" in features[0]:
images = torch.stack([torch.tensor(d.pop("images")) for d in features])
IMAGE_LEN = int(images.shape[-1] / 16) * int(images.shape[-1] / 16) + 1
batch = self.tokenizer.pad(
features,
padding=self.padding,
max_length=self.max_length,
pad_to_multiple_of=self.pad_to_multiple_of,
# Conversion to tensors will fail if we have labels as they are not of the same length yet.
return_tensors="pt" if labels is None else None,
)
if images is not None:
batch["images"] = images
batch = {k: torch.tensor(v, dtype=torch.int64) if isinstance(v[0], list) and k == 'attention_mask' else v
for k, v in batch.items()}
visual_attention_mask = torch.ones((len(batch['input_ids']), IMAGE_LEN), dtype=torch.long)
batch["attention_mask"] = torch.cat([batch['attention_mask'], visual_attention_mask], dim=1)
if labels is None:
return batch
has_bbox_input = "bbox" in features[0]
has_position_input = "position_ids" in features[0]
padding_idx=self.tokenizer.pad_token_id
sequence_length = torch.tensor(batch["input_ids"]).shape[1]
padding_side = self.tokenizer.padding_side
if padding_side == "right":
batch["labels"] = [label + [self.label_pad_token_id] * (sequence_length - len(label)) for label in labels]
if has_bbox_input:
batch["bbox"] = [bbox + [[0, 0, 0, 0]] * (sequence_length - len(bbox)) for bbox in batch["bbox"]]
if has_position_input:
batch["position_ids"] = [position_id + [padding_idx] * (sequence_length - len(position_id))
for position_id in batch["position_ids"]]
else:
batch["labels"] = [[self.label_pad_token_id] * (sequence_length - len(label)) + label for label in labels]
if has_bbox_input:
batch["bbox"] = [[[0, 0, 0, 0]] * (sequence_length - len(bbox)) + bbox for bbox in batch["bbox"]]
if has_position_input:
batch["position_ids"] = [[padding_idx] * (sequence_length - len(position_id))
+ position_id for position_id in batch["position_ids"]]
if 'segment_ids' in batch:
assert 'position_ids' in batch
for i in range(len(batch['segment_ids'])):
batch['segment_ids'][i] = batch['segment_ids'][i] + [batch['segment_ids'][i][-1] + 1] * (sequence_length - len(batch['segment_ids'][i])) + [
batch['segment_ids'][i][-1] + 2] * IMAGE_LEN
batch = {k: torch.tensor(v, dtype=torch.int64) if isinstance(v[0], list) else v for k, v in batch.items()}
if 'segment_ids' in batch:
valid_span = pre_calc_rel_mat(
segment_ids=batch['segment_ids']
)
batch['valid_span'] = valid_span
del batch['segment_ids']
if images is not None:
visual_labels = torch.ones((len(batch['input_ids']), IMAGE_LEN), dtype=torch.long) * -100
batch["labels"] = torch.cat([batch['labels'], visual_labels], dim=1)
return batch
magic_pdf/model/pek_sub_modules/layoutlmv3/layoutlmft/data/funsd.py 0 → 100644
View file @ 1fac6aa7
# coding=utf-8
'''
Reference: https://huggingface.co/datasets/nielsr/funsd/blob/main/funsd.py
'''
import json
import os
import datasets
from .image_utils import load_image, normalize_bbox
logger = datasets.logging.get_logger(__name__)
_CITATION = """\
@article{Jaume2019FUNSDAD,
title={FUNSD: A Dataset for Form Understanding in Noisy Scanned Documents},
author={Guillaume Jaume and H. K. Ekenel and J. Thiran},
journal={2019 International Conference on Document Analysis and Recognition Workshops (ICDARW)},
year={2019},
volume={2},
pages={1-6}
}
"""
_DESCRIPTION = """\
https://guillaumejaume.github.io/FUNSD/
"""
class FunsdConfig(datasets.BuilderConfig):
"""BuilderConfig for FUNSD"""
def __init__(self, **kwargs):
"""BuilderConfig for FUNSD.
Args:
**kwargs: keyword arguments forwarded to super.
"""
super(FunsdConfig, self).__init__(**kwargs)
class Funsd(datasets.GeneratorBasedBuilder):
"""Conll2003 dataset."""
BUILDER_CONFIGS = [
FunsdConfig(name="funsd", version=datasets.Version("1.0.0"), description="FUNSD dataset"),
]
def _info(self):
return datasets.DatasetInfo(
description=_DESCRIPTION,
features=datasets.Features(
{
"id": datasets.Value("string"),
"tokens": datasets.Sequence(datasets.Value("string")),
"bboxes": datasets.Sequence(datasets.Sequence(datasets.Value("int64"))),
"ner_tags": datasets.Sequence(
datasets.features.ClassLabel(
names=["O", "B-HEADER", "I-HEADER", "B-QUESTION", "I-QUESTION", "B-ANSWER", "I-ANSWER"]
)
),
"image": datasets.Array3D(shape=(3, 224, 224), dtype="uint8"),
"image_path": datasets.Value("string"),
}
),
supervised_keys=None,
homepage="https://guillaumejaume.github.io/FUNSD/",
citation=_CITATION,
)
def _split_generators(self, dl_manager):
"""Returns SplitGenerators."""
downloaded_file = dl_manager.download_and_extract("https://guillaumejaume.github.io/FUNSD/dataset.zip")
return [
datasets.SplitGenerator(
name=datasets.Split.TRAIN, gen_kwargs={"filepath": f"{downloaded_file}/dataset/training_data/"}
),
datasets.SplitGenerator(
name=datasets.Split.TEST, gen_kwargs={"filepath": f"{downloaded_file}/dataset/testing_data/"}
),
]
def get_line_bbox(self, bboxs):
x = [bboxs[i][j] for i in range(len(bboxs)) for j in range(0, len(bboxs[i]), 2)]
y = [bboxs[i][j] for i in range(len(bboxs)) for j in range(1, len(bboxs[i]), 2)]
x0, y0, x1, y1 = min(x), min(y), max(x), max(y)
assert x1 >= x0 and y1 >= y0
bbox = [[x0, y0, x1, y1] for _ in range(len(bboxs))]
return bbox
def _generate_examples(self, filepath):
logger.info("⏳ Generating examples from = %s", filepath)
ann_dir = os.path.join(filepath, "annotations")
img_dir = os.path.join(filepath, "images")
for guid, file in enumerate(sorted(os.listdir(ann_dir))):
tokens = []
bboxes = []
ner_tags = []
file_path = os.path.join(ann_dir, file)
with open(file_path, "r", encoding="utf8") as f:
data = json.load(f)
image_path = os.path.join(img_dir, file)
image_path = image_path.replace("json", "png")
image, size = load_image(image_path)
for item in data["form"]:
cur_line_bboxes = []
words, label = item["words"], item["label"]
words = [w for w in words if w["text"].strip() != ""]
if len(words) == 0:
continue
if label == "other":
for w in words:
tokens.append(w["text"])
ner_tags.append("O")
cur_line_bboxes.append(normalize_bbox(w["box"], size))
else:
tokens.append(words[0]["text"])
ner_tags.append("B-" + label.upper())
cur_line_bboxes.append(normalize_bbox(words[0]["box"], size))
for w in words[1:]:
tokens.append(w["text"])
ner_tags.append("I-" + label.upper())
cur_line_bboxes.append(normalize_bbox(w["box"], size))
# by default: --segment_level_layout 1
# if do not want to use segment_level_layout, comment the following line
cur_line_bboxes = self.get_line_bbox(cur_line_bboxes)
# box = normalize_bbox(item["box"], size)
# cur_line_bboxes = [box for _ in range(len(words))]
bboxes.extend(cur_line_bboxes)
yield guid, {"id": str(guid), "tokens": tokens, "bboxes": bboxes, "ner_tags": ner_tags,
"image": image, "image_path": image_path}
\ No newline at end of file
magic_pdf/model/pek_sub_modules/layoutlmv3/layoutlmft/data/image_utils.py 0 → 100644
View file @ 1fac6aa7
import torchvision.transforms.functional as F
import warnings
import math
import random
import numpy as np
from PIL import Image
import torch
from detectron2.data.detection_utils import read_image
from detectron2.data.transforms import ResizeTransform, TransformList
def normalize_bbox(bbox, size):
return [
int(1000 * bbox[0] / size[0]),
int(1000 * bbox[1] / size[1]),
int(1000 * bbox[2] / size[0]),
int(1000 * bbox[3] / size[1]),
]
def load_image(image_path):
image = read_image(image_path, format="BGR")
h = image.shape[0]
w = image.shape[1]
img_trans = TransformList([ResizeTransform(h=h, w=w, new_h=224, new_w=224)])
image = torch.tensor(img_trans.apply_image(image).copy()).permute(2, 0, 1) # copy to make it writeable
return image, (w, h)
def crop(image, i, j, h, w, boxes=None):
cropped_image = F.crop(image, i, j, h, w)
if boxes is not None:
# Currently we cannot use this case since when some boxes is out of the cropped image,
# it may be better to drop out these boxes along with their text input (instead of min or clamp)
# which haven't been implemented here
max_size = torch.as_tensor([w, h], dtype=torch.float32)
cropped_boxes = torch.as_tensor(boxes) - torch.as_tensor([j, i, j, i])
cropped_boxes = torch.min(cropped_boxes.reshape(-1, 2, 2), max_size)
cropped_boxes = cropped_boxes.clamp(min=0)
boxes = cropped_boxes.reshape(-1, 4)
return cropped_image, boxes
def resize(image, size, interpolation, boxes=None):
# It seems that we do not need to resize boxes here, since the boxes will be resized to 1000x1000 finally,
# which is compatible with a square image size of 224x224
rescaled_image = F.resize(image, size, interpolation)
if boxes is None:
return rescaled_image, None
ratios = tuple(float(s) / float(s_orig) for s, s_orig in zip(rescaled_image.size, image.size))
ratio_width, ratio_height = ratios
# boxes = boxes.copy()
scaled_boxes = boxes * torch.as_tensor([ratio_width, ratio_height, ratio_width, ratio_height])
return rescaled_image, scaled_boxes
def clamp(num, min_value, max_value):
return max(min(num, max_value), min_value)
def get_bb(bb, page_size):
bbs = [float(j) for j in bb]
xs, ys = [], []
for i, b in enumerate(bbs):
if i % 2 == 0:
xs.append(b)
else:
ys.append(b)
(width, height) = page_size
return_bb = [
clamp(min(xs), 0, width - 1),
clamp(min(ys), 0, height - 1),
clamp(max(xs), 0, width - 1),
clamp(max(ys), 0, height - 1),
]
return_bb = [
int(1000 * return_bb[0] / width),
int(1000 * return_bb[1] / height),
int(1000 * return_bb[2] / width),
int(1000 * return_bb[3] / height),
]
return return_bb
class ToNumpy:
def __call__(self, pil_img):
np_img = np.array(pil_img, dtype=np.uint8)
if np_img.ndim < 3:
np_img = np.expand_dims(np_img, axis=-1)
np_img = np.rollaxis(np_img, 2) # HWC to CHW
return np_img
class ToTensor:
def __init__(self, dtype=torch.float32):
self.dtype = dtype
def __call__(self, pil_img):
np_img = np.array(pil_img, dtype=np.uint8)
if np_img.ndim < 3:
np_img = np.expand_dims(np_img, axis=-1)
np_img = np.rollaxis(np_img, 2) # HWC to CHW
return torch.from_numpy(np_img).to(dtype=self.dtype)
_pil_interpolation_to_str = {
F.InterpolationMode.NEAREST: 'F.InterpolationMode.NEAREST',
F.InterpolationMode.BILINEAR: 'F.InterpolationMode.BILINEAR',
F.InterpolationMode.BICUBIC: 'F.InterpolationMode.BICUBIC',
F.InterpolationMode.LANCZOS: 'F.InterpolationMode.LANCZOS',
F.InterpolationMode.HAMMING: 'F.InterpolationMode.HAMMING',
F.InterpolationMode.BOX: 'F.InterpolationMode.BOX',
}
def _pil_interp(method):
if method == 'bicubic':
return F.InterpolationMode.BICUBIC
elif method == 'lanczos':
return F.InterpolationMode.LANCZOS
elif method == 'hamming':
return F.InterpolationMode.HAMMING
else:
# default bilinear, do we want to allow nearest?
return F.InterpolationMode.BILINEAR
class Compose:
"""Composes several transforms together. This transform does not support torchscript.
Please, see the note below.
Args:
transforms (list of ``Transform`` objects): list of transforms to compose.
Example:
>>> transforms.Compose([
>>> transforms.CenterCrop(10),
>>> transforms.PILToTensor(),
>>> transforms.ConvertImageDtype(torch.float),
>>> ])
.. note::
In order to script the transformations, please use ``torch.nn.Sequential`` as below.
>>> transforms = torch.nn.Sequential(
>>> transforms.CenterCrop(10),
>>> transforms.Normalize((0.485, 0.456, 0.406), (0.229, 0.224, 0.225)),
>>> )
>>> scripted_transforms = torch.jit.script(transforms)
Make sure to use only scriptable transformations, i.e. that work with ``torch.Tensor``, does not require
`lambda` functions or ``PIL.Image``.
"""
def __init__(self, transforms):
self.transforms = transforms
def __call__(self, img, augmentation=False, box=None):
for t in self.transforms:
img = t(img, augmentation, box)
return img
class RandomResizedCropAndInterpolationWithTwoPic:
"""Crop the given PIL Image to random size and aspect ratio with random interpolation.
A crop of random size (default: of 0.08 to 1.0) of the original size and a random
aspect ratio (default: of 3/4 to 4/3) of the original aspect ratio is made. This crop
is finally resized to given size.
This is popularly used to train the Inception networks.
Args:
size: expected output size of each edge
scale: range of size of the origin size cropped
ratio: range of aspect ratio of the origin aspect ratio cropped
interpolation: Default: PIL.Image.BILINEAR
"""
def __init__(self, size, second_size=None, scale=(0.08, 1.0), ratio=(3. / 4., 4. / 3.),
interpolation='bilinear', second_interpolation='lanczos'):
if isinstance(size, tuple):
self.size = size
else:
self.size = (size, size)
if second_size is not None:
if isinstance(second_size, tuple):
self.second_size = second_size
else:
self.second_size = (second_size, second_size)
else:
self.second_size = None
if (scale[0] > scale[1]) or (ratio[0] > ratio[1]):
warnings.warn("range should be of kind (min, max)")
self.interpolation = _pil_interp(interpolation)
self.second_interpolation = _pil_interp(second_interpolation)
self.scale = scale
self.ratio = ratio
@staticmethod
def get_params(img, scale, ratio):
"""Get parameters for ``crop`` for a random sized crop.
Args:
img (PIL Image): Image to be cropped.
scale (tuple): range of size of the origin size cropped
ratio (tuple): range of aspect ratio of the origin aspect ratio cropped
Returns:
tuple: params (i, j, h, w) to be passed to ``crop`` for a random
sized crop.
"""
area = img.size[0] * img.size[1]
for attempt in range(10):
target_area = random.uniform(*scale) * area
log_ratio = (math.log(ratio[0]), math.log(ratio[1]))
aspect_ratio = math.exp(random.uniform(*log_ratio))
w = int(round(math.sqrt(target_area * aspect_ratio)))
h = int(round(math.sqrt(target_area / aspect_ratio)))
if w <= img.size[0] and h <= img.size[1]:
i = random.randint(0, img.size[1] - h)
j = random.randint(0, img.size[0] - w)
return i, j, h, w
# Fallback to central crop
in_ratio = img.size[0] / img.size[1]
if in_ratio < min(ratio):
w = img.size[0]
h = int(round(w / min(ratio)))
elif in_ratio > max(ratio):
h = img.size[1]
w = int(round(h * max(ratio)))
else: # whole image
w = img.size[0]
h = img.size[1]
i = (img.size[1] - h) // 2
j = (img.size[0] - w) // 2
return i, j, h, w
def __call__(self, img, augmentation=False, box=None):
"""
Args:
img (PIL Image): Image to be cropped and resized.
Returns:
PIL Image: Randomly cropped and resized image.
"""
if augmentation:
i, j, h, w = self.get_params(img, self.scale, self.ratio)
img = F.crop(img, i, j, h, w)
# img, box = crop(img, i, j, h, w, box)
img = F.resize(img, self.size, self.interpolation)
second_img = F.resize(img, self.second_size, self.second_interpolation) \
if self.second_size is not None else None
return img, second_img
def __repr__(self):
if isinstance(self.interpolation, (tuple, list)):
interpolate_str = ' '.join([_pil_interpolation_to_str[x] for x in self.interpolation])
else:
interpolate_str = _pil_interpolation_to_str[self.interpolation]
format_string = self.__class__.__name__ + '(size={0}'.format(self.size)
format_string += ', scale={0}'.format(tuple(round(s, 4) for s in self.scale))
format_string += ', ratio={0}'.format(tuple(round(r, 4) for r in self.ratio))
format_string += ', interpolation={0}'.format(interpolate_str)
if self.second_size is not None:
format_string += ', second_size={0}'.format(self.second_size)
format_string += ', second_interpolation={0}'.format(_pil_interpolation_to_str[self.second_interpolation])
format_string += ')'
return format_string
def pil_loader(path: str) -> Image.Image:
# open path as file to avoid ResourceWarning (https://github.com/python-pillow/Pillow/issues/835)
with open(path, 'rb') as f:
img = Image.open(f)
return img.convert('RGB')
magic_pdf/model/pek_sub_modules/layoutlmv3/layoutlmft/data/xfund.py 0 → 100644
View file @ 1fac6aa7
import os
import json
import torch
from torch.utils.data.dataset import Dataset
from torchvision import transforms
from PIL import Image
from .image_utils import Compose, RandomResizedCropAndInterpolationWithTwoPic
XFund_label2ids = {
"O":0,
'B-HEADER':1,
'I-HEADER':2,
'B-QUESTION':3,
'I-QUESTION':4,
'B-ANSWER':5,
'I-ANSWER':6,
}
class xfund_dataset(Dataset):
def box_norm(self, box, width, height):
def clip(min_num, num, max_num):
return min(max(num, min_num), max_num)
x0, y0, x1, y1 = box
x0 = clip(0, int((x0 / width) * 1000), 1000)
y0 = clip(0, int((y0 / height) * 1000), 1000)
x1 = clip(0, int((x1 / width) * 1000), 1000)
y1 = clip(0, int((y1 / height) * 1000), 1000)
assert x1 >= x0
assert y1 >= y0
return [x0, y0, x1, y1]
def get_segment_ids(self, bboxs):
segment_ids = []
for i in range(len(bboxs)):
if i == 0:
segment_ids.append(0)
else:
if bboxs[i - 1] == bboxs[i]:
segment_ids.append(segment_ids[-1])
else:
segment_ids.append(segment_ids[-1] + 1)
return segment_ids
def get_position_ids(self, segment_ids):
position_ids = []
for i in range(len(segment_ids)):
if i == 0:
position_ids.append(2)
else:
if segment_ids[i] == segment_ids[i - 1]:
position_ids.append(position_ids[-1] + 1)
else:
position_ids.append(2)
return position_ids
def load_data(
self,
data_file,
):
# re-org data format
total_data = {"id": [], "lines": [], "bboxes": [], "ner_tags": [], "image_path": []}
for i in range(len(data_file['documents'])):
width, height = data_file['documents'][i]['img']['width'], data_file['documents'][i]['img'][
'height']
cur_doc_lines, cur_doc_bboxes, cur_doc_ner_tags, cur_doc_image_path = [], [], [], []
for j in range(len(data_file['documents'][i]['document'])):
cur_item = data_file['documents'][i]['document'][j]
cur_doc_lines.append(cur_item['text'])
cur_doc_bboxes.append(self.box_norm(cur_item['box'], width=width, height=height))
cur_doc_ner_tags.append(cur_item['label'])
total_data['id'] += [len(total_data['id'])]
total_data['lines'] += [cur_doc_lines]
total_data['bboxes'] += [cur_doc_bboxes]
total_data['ner_tags'] += [cur_doc_ner_tags]
total_data['image_path'] += [data_file['documents'][i]['img']['fname']]
# tokenize text and get bbox/label
total_input_ids, total_bboxs, total_label_ids = [], [], []
for i in range(len(total_data['lines'])):
cur_doc_input_ids, cur_doc_bboxs, cur_doc_labels = [], [], []
for j in range(len(total_data['lines'][i])):
cur_input_ids = self.tokenizer(total_data['lines'][i][j], truncation=False, add_special_tokens=False, return_attention_mask=False)['input_ids']
if len(cur_input_ids) == 0: continue
cur_label = total_data['ner_tags'][i][j].upper()
if cur_label == 'OTHER':
cur_labels = ["O"] * len(cur_input_ids)
for k in range(len(cur_labels)):
cur_labels[k] = self.label2ids[cur_labels[k]]
else:
cur_labels = [cur_label] * len(cur_input_ids)
cur_labels[0] = self.label2ids['B-' + cur_labels[0]]
for k in range(1, len(cur_labels)):
cur_labels[k] = self.label2ids['I-' + cur_labels[k]]
assert len(cur_input_ids) == len([total_data['bboxes'][i][j]] * len(cur_input_ids)) == len(cur_labels)
cur_doc_input_ids += cur_input_ids
cur_doc_bboxs += [total_data['bboxes'][i][j]] * len(cur_input_ids)
cur_doc_labels += cur_labels
assert len(cur_doc_input_ids) == len(cur_doc_bboxs) == len(cur_doc_labels)
assert len(cur_doc_input_ids) > 0
total_input_ids.append(cur_doc_input_ids)
total_bboxs.append(cur_doc_bboxs)
total_label_ids.append(cur_doc_labels)
assert len(total_input_ids) == len(total_bboxs) == len(total_label_ids)
# split text to several slices because of over-length
input_ids, bboxs, labels = [], [], []
segment_ids, position_ids = [], []
image_path = []
for i in range(len(total_input_ids)):
start = 0
cur_iter = 0
while start < len(total_input_ids[i]):
end = min(start + 510, len(total_input_ids[i]))
input_ids.append([self.tokenizer.cls_token_id] + total_input_ids[i][start: end] + [self.tokenizer.sep_token_id])
bboxs.append([[0, 0, 0, 0]] + total_bboxs[i][start: end] + [[1000, 1000, 1000, 1000]])
labels.append([-100] + total_label_ids[i][start: end] + [-100])
cur_segment_ids = self.get_segment_ids(bboxs[-1])
cur_position_ids = self.get_position_ids(cur_segment_ids)
segment_ids.append(cur_segment_ids)
position_ids.append(cur_position_ids)
image_path.append(os.path.join(self.args.data_dir, "images", total_data['image_path'][i]))
start = end
cur_iter += 1
assert len(input_ids) == len(bboxs) == len(labels) == len(segment_ids) == len(position_ids)
assert len(segment_ids) == len(image_path)
res = {
'input_ids': input_ids,
'bbox': bboxs,
'labels': labels,
'segment_ids': segment_ids,
'position_ids': position_ids,
'image_path': image_path,
}
return res
def __init__(
self,
args,
tokenizer,
mode
):
self.args = args
self.mode = mode
self.cur_la = args.language
self.tokenizer = tokenizer
self.label2ids = XFund_label2ids
self.common_transform = Compose([
RandomResizedCropAndInterpolationWithTwoPic(
size=args.input_size, interpolation=args.train_interpolation,
),
])
self.patch_transform = transforms.Compose([
transforms.ToTensor(),
transforms.Normalize(
mean=torch.tensor((0.5, 0.5, 0.5)),
std=torch.tensor((0.5, 0.5, 0.5)))
])
data_file = json.load(
open(os.path.join(args.data_dir, "{}.{}.json".format(self.cur_la, 'train' if mode == 'train' else 'val')),
'r'))
self.feature = self.load_data(data_file)
def __len__(self):
return len(self.feature['input_ids'])
def __getitem__(self, index):
input_ids = self.feature["input_ids"][index]
# attention_mask = self.feature["attention_mask"][index]
attention_mask = [1] * len(input_ids)
labels = self.feature["labels"][index]
bbox = self.feature["bbox"][index]
segment_ids = self.feature['segment_ids'][index]
position_ids = self.feature['position_ids'][index]
img = pil_loader(self.feature['image_path'][index])
for_patches, _ = self.common_transform(img, augmentation=False)
patch = self.patch_transform(for_patches)
assert len(input_ids) == len(attention_mask) == len(labels) == len(bbox) == len(segment_ids)
res = {
"input_ids": input_ids,
"attention_mask": attention_mask,
"labels": labels,
"bbox": bbox,
"segment_ids": segment_ids,
"position_ids": position_ids,
"images": patch,
}
return res
def pil_loader(path: str) -> Image.Image:
# open path as file to avoid ResourceWarning (https://github.com/python-pillow/Pillow/issues/835)
with open(path, 'rb') as f:
img = Image.open(f)
return img.convert('RGB')
\ No newline at end of file
magic_pdf/model/pek_sub_modules/layoutlmv3/layoutlmft/models/__init__.py 0 → 100644
View file @ 1fac6aa7
from .layoutlmv3 import (
LayoutLMv3Config,
LayoutLMv3ForTokenClassification,
LayoutLMv3ForQuestionAnswering,
LayoutLMv3ForSequenceClassification,
LayoutLMv3Tokenizer,
)
magic_pdf/model/pek_sub_modules/layoutlmv3/layoutlmft/models/layoutlmv3/__init__.py 0 → 100644
View file @ 1fac6aa7
from transformers import AutoConfig, AutoModel, AutoModelForTokenClassification, \
AutoModelForQuestionAnswering, AutoModelForSequenceClassification, AutoTokenizer
from transformers.convert_slow_tokenizer import SLOW_TO_FAST_CONVERTERS, RobertaConverter
from .configuration_layoutlmv3 import LayoutLMv3Config
from .modeling_layoutlmv3 import (
LayoutLMv3ForTokenClassification,
LayoutLMv3ForQuestionAnswering,
LayoutLMv3ForSequenceClassification,
LayoutLMv3Model,
)
from .tokenization_layoutlmv3 import LayoutLMv3Tokenizer
from .tokenization_layoutlmv3_fast import LayoutLMv3TokenizerFast
#AutoConfig.register("layoutlmv3", LayoutLMv3Config)
#AutoModel.register(LayoutLMv3Config, LayoutLMv3Model)
#AutoModelForTokenClassification.register(LayoutLMv3Config, LayoutLMv3ForTokenClassification)
#AutoModelForQuestionAnswering.register(LayoutLMv3Config, LayoutLMv3ForQuestionAnswering)
#AutoModelForSequenceClassification.register(LayoutLMv3Config, LayoutLMv3ForSequenceClassification)
#AutoTokenizer.register(
# LayoutLMv3Config, slow_tokenizer_class=LayoutLMv3Tokenizer, fast_tokenizer_class=LayoutLMv3TokenizerFast
#)
SLOW_TO_FAST_CONVERTERS.update({"LayoutLMv3Tokenizer": RobertaConverter})
magic_pdf/model/pek_sub_modules/layoutlmv3/layoutlmft/models/layoutlmv3/configuration_layoutlmv3.py 0 → 100644
View file @ 1fac6aa7
# coding=utf-8
from transformers.models.bert.configuration_bert import BertConfig
from transformers.utils import logging
logger = logging.get_logger(__name__)
LAYOUTLMV3_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"layoutlmv3-base": "https://huggingface.co/microsoft/layoutlmv3-base/resolve/main/config.json",
"layoutlmv3-large": "https://huggingface.co/microsoft/layoutlmv3-large/resolve/main/config.json",
# See all LayoutLMv3 models at https://huggingface.co/models?filter=layoutlmv3
}
class LayoutLMv3Config(BertConfig):
model_type = "layoutlmv3"
def __init__(
self,
pad_token_id=1,
bos_token_id=0,
eos_token_id=2,
max_2d_position_embeddings=1024,
coordinate_size=None,
shape_size=None,
has_relative_attention_bias=False,
rel_pos_bins=32,
max_rel_pos=128,
has_spatial_attention_bias=False,
rel_2d_pos_bins=64,
max_rel_2d_pos=256,
visual_embed=True,
mim=False,
wpa_task=False,
discrete_vae_weight_path='',
discrete_vae_type='dall-e',
input_size=224,
second_input_size=112,
device='cuda',
**kwargs
):
"""Constructs RobertaConfig."""
super().__init__(pad_token_id=pad_token_id, bos_token_id=bos_token_id, eos_token_id=eos_token_id, **kwargs)
self.max_2d_position_embeddings = max_2d_position_embeddings
self.coordinate_size = coordinate_size
self.shape_size = shape_size
self.has_relative_attention_bias = has_relative_attention_bias
self.rel_pos_bins = rel_pos_bins
self.max_rel_pos = max_rel_pos
self.has_spatial_attention_bias = has_spatial_attention_bias
self.rel_2d_pos_bins = rel_2d_pos_bins
self.max_rel_2d_pos = max_rel_2d_pos
self.visual_embed = visual_embed
self.mim = mim
self.wpa_task = wpa_task
self.discrete_vae_weight_path = discrete_vae_weight_path
self.discrete_vae_type = discrete_vae_type
self.input_size = input_size
self.second_input_size = second_input_size
self.device = device
magic_pdf/model/pek_sub_modules/layoutlmv3/layoutlmft/models/layoutlmv3/modeling_layoutlmv3.py 0 → 100644
View file @ 1fac6aa7
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch LayoutLMv3 model. """
import math
import torch
import torch.nn as nn
import torch.nn.functional as F
import torch.utils.checkpoint
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from transformers import apply_chunking_to_forward
from transformers.modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPoolingAndCrossAttentions,
MaskedLMOutput,
TokenClassifierOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
)
from transformers.modeling_utils import PreTrainedModel, find_pruneable_heads_and_indices, prune_linear_layer
from transformers.models.roberta.modeling_roberta import (
RobertaIntermediate,
RobertaLMHead,
RobertaOutput,
RobertaSelfOutput,
)
from transformers.utils import logging
from .configuration_layoutlmv3 import LayoutLMv3Config
from timm.models.layers import to_2tuple
logger = logging.get_logger(__name__)
class PatchEmbed(nn.Module):
""" Image to Patch Embedding
"""
def __init__(self, img_size=224, patch_size=16, in_chans=3, embed_dim=768):
super().__init__()
img_size = to_2tuple(img_size)
patch_size = to_2tuple(patch_size)
self.patch_shape = (img_size[0] // patch_size[0], img_size[1] // patch_size[1])
self.proj = nn.Conv2d(in_chans, embed_dim, kernel_size=patch_size, stride=patch_size)
# The following variables are used in detection mycheckpointer.py
self.num_patches = (img_size[1] // patch_size[1]) * (img_size[0] // patch_size[0])
self.num_patches_w = self.patch_shape[0]
self.num_patches_h = self.patch_shape[1]
def forward(self, x, position_embedding=None):
x = self.proj(x)
if position_embedding is not None:
# interpolate the position embedding to the corresponding size
position_embedding = position_embedding.view(1, self.patch_shape[0], self.patch_shape[1], -1).permute(0, 3, 1, 2)
Hp, Wp = x.shape[2], x.shape[3]
position_embedding = F.interpolate(position_embedding, size=(Hp, Wp), mode='bicubic')
x = x + position_embedding
x = x.flatten(2).transpose(1, 2)
return x
class LayoutLMv3Embeddings(nn.Module):
"""
Same as BertEmbeddings with a tiny tweak for positional embeddings indexing.
"""
# Copied from transformers.models.bert.modeling_bert.BertEmbeddings.__init__
def __init__(self, config):
super().__init__()
self.word_embeddings = nn.Embedding(config.vocab_size, config.hidden_size, padding_idx=config.pad_token_id)
self.token_type_embeddings = nn.Embedding(config.type_vocab_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
# position_ids (1, len position emb) is contiguous in memory and exported when serialized
self.register_buffer("position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)))
# End copy
self.padding_idx = config.pad_token_id
self.position_embeddings = nn.Embedding(
config.max_position_embeddings, config.hidden_size, padding_idx=self.padding_idx
)
self.x_position_embeddings = nn.Embedding(config.max_2d_position_embeddings, config.coordinate_size)
self.y_position_embeddings = nn.Embedding(config.max_2d_position_embeddings, config.coordinate_size)
self.h_position_embeddings = nn.Embedding(config.max_2d_position_embeddings, config.shape_size)
self.w_position_embeddings = nn.Embedding(config.max_2d_position_embeddings, config.shape_size)
def _calc_spatial_position_embeddings(self, bbox):
try:
assert torch.all(0 <= bbox) and torch.all(bbox <= 1023)
left_position_embeddings = self.x_position_embeddings(bbox[:, :, 0])
upper_position_embeddings = self.y_position_embeddings(bbox[:, :, 1])
right_position_embeddings = self.x_position_embeddings(bbox[:, :, 2])
lower_position_embeddings = self.y_position_embeddings(bbox[:, :, 3])
except IndexError as e:
raise IndexError("The :obj:`bbox` coordinate values should be within 0-1000 range.") from e
h_position_embeddings = self.h_position_embeddings(torch.clip(bbox[:, :, 3] - bbox[:, :, 1], 0, 1023))
w_position_embeddings = self.w_position_embeddings(torch.clip(bbox[:, :, 2] - bbox[:, :, 0], 0, 1023))
# below is the difference between LayoutLMEmbeddingsV2 (torch.cat) and LayoutLMEmbeddingsV1 (add)
spatial_position_embeddings = torch.cat(
[
left_position_embeddings,
upper_position_embeddings,
right_position_embeddings,
lower_position_embeddings,
h_position_embeddings,
w_position_embeddings,
],
dim=-1,
)
return spatial_position_embeddings
def create_position_ids_from_input_ids(self, input_ids, padding_idx, past_key_values_length=0):
"""
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols
are ignored. This is modified from fairseq's `utils.make_positions`.
Args:
x: torch.Tensor x:
Returns: torch.Tensor
"""
# The series of casts and type-conversions here are carefully balanced to both work with ONNX export and XLA.
mask = input_ids.ne(padding_idx).int()
incremental_indices = (torch.cumsum(mask, dim=1).type_as(mask) + past_key_values_length) * mask
return incremental_indices.long() + padding_idx
def forward(
self,
input_ids=None,
bbox=None,
token_type_ids=None,
position_ids=None,
inputs_embeds=None,
past_key_values_length=0,
):
if position_ids is None:
if input_ids is not None:
# Create the position ids from the input token ids. Any padded tokens remain padded.
position_ids = self.create_position_ids_from_input_ids(
input_ids, self.padding_idx, past_key_values_length).to(input_ids.device)
else:
position_ids = self.create_position_ids_from_inputs_embeds(inputs_embeds)
if input_ids is not None:
input_shape = input_ids.size()
else:
input_shape = inputs_embeds.size()[:-1]
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=self.position_ids.device)
if inputs_embeds is None:
inputs_embeds = self.word_embeddings(input_ids)
token_type_embeddings = self.token_type_embeddings(token_type_ids)
embeddings = inputs_embeds + token_type_embeddings
position_embeddings = self.position_embeddings(position_ids)
embeddings += position_embeddings
spatial_position_embeddings = self._calc_spatial_position_embeddings(bbox)
embeddings = embeddings + spatial_position_embeddings
embeddings = self.LayerNorm(embeddings)
embeddings = self.dropout(embeddings)
return embeddings
def create_position_ids_from_inputs_embeds(self, inputs_embeds):
"""
We are provided embeddings directly. We cannot infer which are padded so just generate sequential position ids.
Args:
inputs_embeds: torch.Tensor≈
Returns: torch.Tensor
"""
input_shape = inputs_embeds.size()[:-1]
sequence_length = input_shape[1]
position_ids = torch.arange(
self.padding_idx + 1, sequence_length + self.padding_idx + 1, dtype=torch.long, device=inputs_embeds.device
)
return position_ids.unsqueeze(0).expand(input_shape)
class LayoutLMv3PreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = LayoutLMv3Config
base_model_prefix = "layoutlmv3"
# Copied from transformers.models.bert.modeling_bert.BertPreTrainedModel._init_weights
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, nn.Linear):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
class LayoutLMv3SelfAttention(nn.Module):
def __init__(self, config):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads})"
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = nn.Linear(config.hidden_size, self.all_head_size)
self.key = nn.Linear(config.hidden_size, self.all_head_size)
self.value = nn.Linear(config.hidden_size, self.all_head_size)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
self.has_relative_attention_bias = config.has_relative_attention_bias
self.has_spatial_attention_bias = config.has_spatial_attention_bias
def transpose_for_scores(self, x):
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(*new_x_shape)
return x.permute(0, 2, 1, 3)
def cogview_attn(self, attention_scores, alpha=32):
'''
https://arxiv.org/pdf/2105.13290.pdf
Section 2.4 Stabilization of training: Precision Bottleneck Relaxation (PB-Relax).
A replacement of the original nn.Softmax(dim=-1)(attention_scores)
Seems the new attention_probs will result in a slower speed and a little bias
Can use torch.allclose(standard_attention_probs, cogview_attention_probs, atol=1e-08) for comparison
The smaller atol (e.g., 1e-08), the better.
'''
scaled_attention_scores = attention_scores / alpha
max_value = scaled_attention_scores.amax(dim=(-1)).unsqueeze(-1)
# max_value = scaled_attention_scores.amax(dim=(-2, -1)).unsqueeze(-1).unsqueeze(-1)
new_attention_scores = (scaled_attention_scores - max_value) * alpha
return nn.Softmax(dim=-1)(new_attention_scores)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
rel_pos=None,
rel_2d_pos=None,
):
mixed_query_layer = self.query(hidden_states)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
is_cross_attention = encoder_hidden_states is not None
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_layer = past_key_value[0]
value_layer = past_key_value[1]
attention_mask = encoder_attention_mask
elif is_cross_attention:
key_layer = self.transpose_for_scores(self.key(encoder_hidden_states))
value_layer = self.transpose_for_scores(self.value(encoder_hidden_states))
attention_mask = encoder_attention_mask
elif past_key_value is not None:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
key_layer = torch.cat([past_key_value[0], key_layer], dim=2)
value_layer = torch.cat([past_key_value[1], value_layer], dim=2)
else:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
# The attention scores QT K/√d could be significantly larger than input elements, and result in overflow.
# Changing the computational order into QT(K/√d) alleviates the problem. (https://arxiv.org/pdf/2105.13290.pdf)
attention_scores = torch.matmul(query_layer / math.sqrt(self.attention_head_size), key_layer.transpose(-1, -2))
if self.has_relative_attention_bias and self.has_spatial_attention_bias:
attention_scores += (rel_pos + rel_2d_pos) / math.sqrt(self.attention_head_size)
elif self.has_relative_attention_bias:
attention_scores += rel_pos / math.sqrt(self.attention_head_size)
# if self.has_relative_attention_bias:
# attention_scores += rel_pos
# if self.has_spatial_attention_bias:
# attention_scores += rel_2d_pos
# attention_scores = attention_scores / math.sqrt(self.attention_head_size)
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in RobertaModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
# attention_probs = nn.Softmax(dim=-1)(attention_scores) # comment the line below and use this line for speedup
attention_probs = self.cogview_attn(attention_scores) # to stablize training
# assert torch.allclose(attention_probs, nn.Softmax(dim=-1)(attention_scores), atol=1e-8)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(*new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
return outputs
class LayoutLMv3Attention(nn.Module):
def __init__(self, config):
super().__init__()
self.self = LayoutLMv3SelfAttention(config)
self.output = RobertaSelfOutput(config)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
rel_pos=None,
rel_2d_pos=None,
):
self_outputs = self.self(
hidden_states,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
rel_pos=rel_pos,
rel_2d_pos=rel_2d_pos,
)
attention_output = self.output(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
class LayoutLMv3Layer(nn.Module):
def __init__(self, config):
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = LayoutLMv3Attention(config)
assert not config.is_decoder and not config.add_cross_attention, \
"This version do not support decoder. Please refer to RoBERTa for implementation of is_decoder."
self.intermediate = RobertaIntermediate(config)
self.output = RobertaOutput(config)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
rel_pos=None,
rel_2d_pos=None,
):
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
self_attention_outputs = self.attention(
hidden_states,
attention_mask,
head_mask,
output_attentions=output_attentions,
past_key_value=self_attn_past_key_value,
rel_pos=rel_pos,
rel_2d_pos=rel_2d_pos,
)
attention_output = self_attention_outputs[0]
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
layer_output = apply_chunking_to_forward(
self.feed_forward_chunk, self.chunk_size_feed_forward, self.seq_len_dim, attention_output
)
outputs = (layer_output,) + outputs
return outputs
def feed_forward_chunk(self, attention_output):
intermediate_output = self.intermediate(attention_output)
layer_output = self.output(intermediate_output, attention_output)
return layer_output
class LayoutLMv3Encoder(nn.Module):
def __init__(self, config, detection=False, out_features=None):
super().__init__()
self.config = config
self.detection = detection
self.layer = nn.ModuleList([LayoutLMv3Layer(config) for _ in range(config.num_hidden_layers)])
self.gradient_checkpointing = False
self.has_relative_attention_bias = config.has_relative_attention_bias
self.has_spatial_attention_bias = config.has_spatial_attention_bias
if self.has_relative_attention_bias:
self.rel_pos_bins = config.rel_pos_bins
self.max_rel_pos = config.max_rel_pos
self.rel_pos_onehot_size = config.rel_pos_bins
self.rel_pos_bias = nn.Linear(self.rel_pos_onehot_size, config.num_attention_heads, bias=False)
if self.has_spatial_attention_bias:
self.max_rel_2d_pos = config.max_rel_2d_pos
self.rel_2d_pos_bins = config.rel_2d_pos_bins
self.rel_2d_pos_onehot_size = config.rel_2d_pos_bins
self.rel_pos_x_bias = nn.Linear(self.rel_2d_pos_onehot_size, config.num_attention_heads, bias=False)
self.rel_pos_y_bias = nn.Linear(self.rel_2d_pos_onehot_size, config.num_attention_heads, bias=False)
if self.detection:
self.gradient_checkpointing = True
embed_dim = self.config.hidden_size
self.out_features = out_features
self.out_indices = [int(name[5:]) for name in out_features]
self.fpn1 = nn.Sequential(
nn.ConvTranspose2d(embed_dim, embed_dim, kernel_size=2, stride=2),
# nn.SyncBatchNorm(embed_dim),
nn.BatchNorm2d(embed_dim),
nn.GELU(),
nn.ConvTranspose2d(embed_dim, embed_dim, kernel_size=2, stride=2),
)
self.fpn2 = nn.Sequential(
nn.ConvTranspose2d(embed_dim, embed_dim, kernel_size=2, stride=2),
)
self.fpn3 = nn.Identity()
self.fpn4 = nn.MaxPool2d(kernel_size=2, stride=2)
self.ops = [self.fpn1, self.fpn2, self.fpn3, self.fpn4]
def relative_position_bucket(self, relative_position, bidirectional=True, num_buckets=32, max_distance=128):
ret = 0
if bidirectional:
num_buckets //= 2
ret += (relative_position > 0).long() * num_buckets
n = torch.abs(relative_position)
else:
n = torch.max(-relative_position, torch.zeros_like(relative_position))
# now n is in the range [0, inf)
# half of the buckets are for exact increments in positions
max_exact = num_buckets // 2
is_small = n < max_exact
# The other half of the buckets are for logarithmically bigger bins in positions up to max_distance
val_if_large = max_exact + (
torch.log(n.float() / max_exact) / math.log(max_distance / max_exact) * (num_buckets - max_exact)
).to(torch.long)
val_if_large = torch.min(val_if_large, torch.full_like(val_if_large, num_buckets - 1))
ret += torch.where(is_small, n, val_if_large)
return ret
def _cal_1d_pos_emb(self, hidden_states, position_ids, valid_span):
VISUAL_NUM = 196 + 1
rel_pos_mat = position_ids.unsqueeze(-2) - position_ids.unsqueeze(-1)
if valid_span is not None:
# for the text part, if two words are not in the same line,
# set their distance to the max value (position_ids.shape[-1])
rel_pos_mat[(rel_pos_mat > 0) & (valid_span == False)] = position_ids.shape[1]
rel_pos_mat[(rel_pos_mat < 0) & (valid_span == False)] = -position_ids.shape[1]
# image-text, minimum distance
rel_pos_mat[:, -VISUAL_NUM:, :-VISUAL_NUM] = 0
rel_pos_mat[:, :-VISUAL_NUM, -VISUAL_NUM:] = 0
rel_pos = self.relative_position_bucket(
rel_pos_mat,
num_buckets=self.rel_pos_bins,
max_distance=self.max_rel_pos,
)
rel_pos = F.one_hot(rel_pos, num_classes=self.rel_pos_onehot_size).type_as(hidden_states)
rel_pos = self.rel_pos_bias(rel_pos).permute(0, 3, 1, 2)
rel_pos = rel_pos.contiguous()
return rel_pos
def _cal_2d_pos_emb(self, hidden_states, bbox):
position_coord_x = bbox[:, :, 0]
position_coord_y = bbox[:, :, 3]
rel_pos_x_2d_mat = position_coord_x.unsqueeze(-2) - position_coord_x.unsqueeze(-1)
rel_pos_y_2d_mat = position_coord_y.unsqueeze(-2) - position_coord_y.unsqueeze(-1)
rel_pos_x = self.relative_position_bucket(
rel_pos_x_2d_mat,
num_buckets=self.rel_2d_pos_bins,
max_distance=self.max_rel_2d_pos,
)
rel_pos_y = self.relative_position_bucket(
rel_pos_y_2d_mat,
num_buckets=self.rel_2d_pos_bins,
max_distance=self.max_rel_2d_pos,
)
rel_pos_x = F.one_hot(rel_pos_x, num_classes=self.rel_2d_pos_onehot_size).type_as(hidden_states)
rel_pos_y = F.one_hot(rel_pos_y, num_classes=self.rel_2d_pos_onehot_size).type_as(hidden_states)
rel_pos_x = self.rel_pos_x_bias(rel_pos_x).permute(0, 3, 1, 2)
rel_pos_y = self.rel_pos_y_bias(rel_pos_y).permute(0, 3, 1, 2)
rel_pos_x = rel_pos_x.contiguous()
rel_pos_y = rel_pos_y.contiguous()
rel_2d_pos = rel_pos_x + rel_pos_y
return rel_2d_pos
def forward(
self,
hidden_states,
bbox=None,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_values=None,
use_cache=None,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
position_ids=None,
Hp=None,
Wp=None,
valid_span=None,
):
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None
next_decoder_cache = () if use_cache else None
rel_pos = self._cal_1d_pos_emb(hidden_states, position_ids, valid_span) if self.has_relative_attention_bias else None
rel_2d_pos = self._cal_2d_pos_emb(hidden_states, bbox) if self.has_spatial_attention_bias else None
if self.detection:
feat_out = {}
j = 0
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
past_key_value = past_key_values[i] if past_key_values is not None else None
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
def create_custom_forward(module):
def custom_forward(*inputs):
return module(*inputs)
# return module(*inputs, past_key_value, output_attentions, rel_pos, rel_2d_pos)
# The above line will cause error:
# RuntimeError: Trying to backward through the graph a second time
# (or directly access saved tensors after they have already been freed).
return custom_forward
layer_outputs = torch.utils.checkpoint.checkpoint(
create_custom_forward(layer_module),
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
rel_pos,
rel_2d_pos
)
else:
layer_outputs = layer_module(
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
rel_pos=rel_pos,
rel_2d_pos=rel_2d_pos,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache += (layer_outputs[-1],)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if self.config.add_cross_attention:
all_cross_attentions = all_cross_attentions + (layer_outputs[2],)
if self.detection and i in self.out_indices:
xp = hidden_states[:, -Hp*Wp:, :].permute(0, 2, 1).reshape(len(hidden_states), -1, Hp, Wp)
feat_out[self.out_features[j]] = self.ops[j](xp.contiguous())
j += 1
if self.detection:
return feat_out
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_decoder_cache,
all_hidden_states,
all_self_attentions,
all_cross_attentions,
]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
class LayoutLMv3Model(LayoutLMv3PreTrainedModel):
"""
"""
_keys_to_ignore_on_load_missing = [r"position_ids"]
# Copied from transformers.models.bert.modeling_bert.BertModel.__init__ with Bert->Roberta
def __init__(self, config, detection=False, out_features=None, image_only=False):
super().__init__(config)
self.config = config
assert not config.is_decoder and not config.add_cross_attention, \
"This version do not support decoder. Please refer to RoBERTa for implementation of is_decoder."
self.detection = detection
if not self.detection:
self.image_only = False
else:
assert config.visual_embed
self.image_only = image_only
if not self.image_only:
self.embeddings = LayoutLMv3Embeddings(config)
self.encoder = LayoutLMv3Encoder(config, detection=detection, out_features=out_features)
if config.visual_embed:
embed_dim = self.config.hidden_size
# use the default pre-training parameters for fine-tuning (e.g., input_size)
# when the input_size is larger in fine-tuning, we will interpolate the position embedding in forward
self.patch_embed = PatchEmbed(embed_dim=embed_dim)
patch_size = 16
size = int(self.config.input_size / patch_size)
self.cls_token = nn.Parameter(torch.zeros(1, 1, embed_dim))
self.pos_embed = nn.Parameter(torch.zeros(1, size * size + 1, embed_dim))
self.pos_drop = nn.Dropout(p=0.)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
if self.config.has_relative_attention_bias or self.config.has_spatial_attention_bias:
self._init_visual_bbox(img_size=(size, size))
from functools import partial
norm_layer = partial(nn.LayerNorm, eps=1e-6)
self.norm = norm_layer(embed_dim)
self.init_weights()
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
def _init_visual_bbox(self, img_size=(14, 14), max_len=1000):
visual_bbox_x = torch.div(torch.arange(0, max_len * (img_size[1] + 1), max_len),
img_size[1], rounding_mode='trunc')
visual_bbox_y = torch.div(torch.arange(0, max_len * (img_size[0] + 1), max_len),
img_size[0], rounding_mode='trunc')
visual_bbox = torch.stack(
[
visual_bbox_x[:-1].repeat(img_size[0], 1),
visual_bbox_y[:-1].repeat(img_size[1], 1).transpose(0, 1),
visual_bbox_x[1:].repeat(img_size[0], 1),
visual_bbox_y[1:].repeat(img_size[1], 1).transpose(0, 1),
],
dim=-1,
).view(-1, 4)
cls_token_box = torch.tensor([[0 + 1, 0 + 1, max_len - 1, max_len - 1]])
self.visual_bbox = torch.cat([cls_token_box, visual_bbox], dim=0)
def _calc_visual_bbox(self, device, dtype, bsz): # , img_size=(14, 14), max_len=1000):
visual_bbox = self.visual_bbox.repeat(bsz, 1, 1)
visual_bbox = visual_bbox.to(device).type(dtype)
return visual_bbox
def forward_image(self, x):
if self.detection:
x = self.patch_embed(x, self.pos_embed[:, 1:, :] if self.pos_embed is not None else None)
else:
x = self.patch_embed(x)
batch_size, seq_len, _ = x.size()
cls_tokens = self.cls_token.expand(batch_size, -1, -1) # stole cls_tokens impl from Phil Wang, thanks
if self.pos_embed is not None and self.detection:
cls_tokens = cls_tokens + self.pos_embed[:, :1, :]
x = torch.cat((cls_tokens, x), dim=1)
if self.pos_embed is not None and not self.detection:
x = x + self.pos_embed
x = self.pos_drop(x)
x = self.norm(x)
return x
# Copied from transformers.models.bert.modeling_bert.BertModel.forward
def forward(
self,
input_ids=None,
bbox=None,
attention_mask=None,
token_type_ids=None,
valid_span=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_values=None,
use_cache=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
images=None,
):
r"""
encoder_hidden_states (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`, `optional`):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in ``[0, 1]``:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
past_key_values (:obj:`tuple(tuple(torch.FloatTensor))` of length :obj:`config.n_layers` with each tuple having 4 tensors of shape :obj:`(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If :obj:`past_key_values` are used, the user can optionally input only the last :obj:`decoder_input_ids`
(those that don't have their past key value states given to this model) of shape :obj:`(batch_size, 1)`
instead of all :obj:`decoder_input_ids` of shape :obj:`(batch_size, sequence_length)`.
use_cache (:obj:`bool`, `optional`):
If set to :obj:`True`, :obj:`past_key_values` key value states are returned and can be used to speed up
decoding (see :obj:`past_key_values`).
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
use_cache = False
# if input_ids is not None and inputs_embeds is not None:
# raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
if input_ids is not None:
input_shape = input_ids.size()
batch_size, seq_length = input_shape
device = input_ids.device
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
batch_size, seq_length = input_shape
device = inputs_embeds.device
elif images is not None:
batch_size = len(images)
device = images.device
else:
raise ValueError("You have to specify either input_ids or inputs_embeds or images")
if not self.image_only:
# past_key_values_length
past_key_values_length = past_key_values[0][0].shape[2] if past_key_values is not None else 0
if attention_mask is None:
attention_mask = torch.ones(((batch_size, seq_length + past_key_values_length)), device=device)
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
# extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape, device)
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
if not self.image_only:
if bbox is None:
bbox = torch.zeros(tuple(list(input_shape) + [4]), dtype=torch.long, device=device)
embedding_output = self.embeddings(
input_ids=input_ids,
bbox=bbox,
position_ids=position_ids,
token_type_ids=token_type_ids,
inputs_embeds=inputs_embeds,
past_key_values_length=past_key_values_length,
)
final_bbox = final_position_ids = None
Hp = Wp = None
if images is not None:
patch_size = 16
Hp, Wp = int(images.shape[2] / patch_size), int(images.shape[3] / patch_size)
visual_emb = self.forward_image(images)
if self.detection:
visual_attention_mask = torch.ones((batch_size, visual_emb.shape[1]), dtype=torch.long, device=device)
if self.image_only:
attention_mask = visual_attention_mask
else:
attention_mask = torch.cat([attention_mask, visual_attention_mask], dim=1)
elif self.image_only:
attention_mask = torch.ones((batch_size, visual_emb.shape[1]), dtype=torch.long, device=device)
if self.config.has_relative_attention_bias or self.config.has_spatial_attention_bias:
if self.config.has_spatial_attention_bias:
visual_bbox = self._calc_visual_bbox(device, dtype=torch.long, bsz=batch_size)
if self.image_only:
final_bbox = visual_bbox
else:
final_bbox = torch.cat([bbox, visual_bbox], dim=1)
visual_position_ids = torch.arange(0, visual_emb.shape[1], dtype=torch.long, device=device).repeat(
batch_size, 1)
if self.image_only:
final_position_ids = visual_position_ids
else:
position_ids = torch.arange(0, input_shape[1], device=device).unsqueeze(0)
position_ids = position_ids.expand_as(input_ids)
final_position_ids = torch.cat([position_ids, visual_position_ids], dim=1)
if self.image_only:
embedding_output = visual_emb
else:
embedding_output = torch.cat([embedding_output, visual_emb], dim=1)
embedding_output = self.LayerNorm(embedding_output)
embedding_output = self.dropout(embedding_output)
elif self.config.has_relative_attention_bias or self.config.has_spatial_attention_bias:
if self.config.has_spatial_attention_bias:
final_bbox = bbox
if self.config.has_relative_attention_bias:
position_ids = self.embeddings.position_ids[:, :input_shape[1]]
position_ids = position_ids.expand_as(input_ids)
final_position_ids = position_ids
extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, None, device)
encoder_outputs = self.encoder(
embedding_output,
bbox=final_bbox,
position_ids=final_position_ids,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
Hp=Hp,
Wp=Wp,
valid_span=valid_span,
)
if self.detection:
return encoder_outputs
sequence_output = encoder_outputs[0]
pooled_output = None
if not return_dict:
return (sequence_output, pooled_output) + encoder_outputs[1:]
return BaseModelOutputWithPoolingAndCrossAttentions(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
past_key_values=encoder_outputs.past_key_values,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
class LayoutLMv3ClassificationHead(nn.Module):
"""
Head for sentence-level classification tasks.
Reference: RobertaClassificationHead
"""
def __init__(self, config, pool_feature=False):
super().__init__()
self.pool_feature = pool_feature
if pool_feature:
self.dense = nn.Linear(config.hidden_size*3, config.hidden_size)
else:
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
classifier_dropout = (
config.classifier_dropout if config.classifier_dropout is not None else config.hidden_dropout_prob
)
self.dropout = nn.Dropout(classifier_dropout)
self.out_proj = nn.Linear(config.hidden_size, config.num_labels)
def forward(self, x):
# x = features[:, 0, :] # take <s> token (equiv. to [CLS])
x = self.dropout(x)
x = self.dense(x)
x = torch.tanh(x)
x = self.dropout(x)
x = self.out_proj(x)
return x
class LayoutLMv3ForTokenClassification(LayoutLMv3PreTrainedModel):
_keys_to_ignore_on_load_unexpected = [r"pooler"]
_keys_to_ignore_on_load_missing = [r"position_ids"]
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.layoutlmv3 = LayoutLMv3Model(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
if config.num_labels < 10:
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
else:
self.classifier = LayoutLMv3ClassificationHead(config, pool_feature=False)
self.init_weights()
def forward(
self,
input_ids=None,
bbox=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
valid_span=None,
head_mask=None,
inputs_embeds=None,
labels=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
images=None,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Labels for computing the token classification loss. Indices should be in ``[0, ..., config.num_labels -
1]``.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.layoutlmv3(
input_ids,
bbox=bbox,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
images=images,
valid_span=valid_span,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output)
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
# Only keep active parts of the loss
if attention_mask is not None:
active_loss = attention_mask.view(-1) == 1
active_logits = logits.view(-1, self.num_labels)
active_labels = torch.where(
active_loss, labels.view(-1), torch.tensor(loss_fct.ignore_index).type_as(labels)
)
loss = loss_fct(active_logits, active_labels)
else:
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
class LayoutLMv3ForQuestionAnswering(LayoutLMv3PreTrainedModel):
_keys_to_ignore_on_load_unexpected = [r"pooler"]
_keys_to_ignore_on_load_missing = [r"position_ids"]
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.layoutlmv3 = LayoutLMv3Model(config)
# self.qa_outputs = nn.Linear(config.hidden_size, config.num_labels)
self.qa_outputs = LayoutLMv3ClassificationHead(config, pool_feature=False)
self.init_weights()
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
valid_span=None,
head_mask=None,
inputs_embeds=None,
start_positions=None,
end_positions=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
bbox=None,
images=None,
):
r"""
start_positions (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (:obj:`sequence_length`). Position outside of the
sequence are not taken into account for computing the loss.
end_positions (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (:obj:`sequence_length`). Position outside of the
sequence are not taken into account for computing the loss.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.layoutlmv3(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
bbox=bbox,
images=images,
valid_span=valid_span,
)
sequence_output = outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = logits.split(1, dim=-1)
start_logits = start_logits.squeeze(-1).contiguous()
end_logits = end_logits.squeeze(-1).contiguous()
total_loss = None
if start_positions is not None and end_positions is not None:
# If we are on multi-GPU, split add a dimension
if len(start_positions.size()) > 1:
start_positions = start_positions.squeeze(-1)
if len(end_positions.size()) > 1:
end_positions = end_positions.squeeze(-1)
# sometimes the start/end positions are outside our model inputs, we ignore these terms
ignored_index = start_logits.size(1)
start_positions = start_positions.clamp(0, ignored_index)
end_positions = end_positions.clamp(0, ignored_index)
loss_fct = CrossEntropyLoss(ignore_index=ignored_index)
start_loss = loss_fct(start_logits, start_positions)
end_loss = loss_fct(end_logits, end_positions)
total_loss = (start_loss + end_loss) / 2
if not return_dict:
output = (start_logits, end_logits) + outputs[2:]
return ((total_loss,) + output) if total_loss is not None else output
return QuestionAnsweringModelOutput(
loss=total_loss,
start_logits=start_logits,
end_logits=end_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
class LayoutLMv3ForSequenceClassification(LayoutLMv3PreTrainedModel):
_keys_to_ignore_on_load_missing = [r"position_ids"]
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.config = config
self.layoutlmv3 = LayoutLMv3Model(config)
self.classifier = LayoutLMv3ClassificationHead(config, pool_feature=False)
self.init_weights()
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
valid_span=None,
head_mask=None,
inputs_embeds=None,
labels=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
bbox=None,
images=None,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the sequence classification/regression loss. Indices should be in :obj:`[0, ...,
config.num_labels - 1]`. If :obj:`config.num_labels == 1` a regression loss is computed (Mean-Square loss),
If :obj:`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.layoutlmv3(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
bbox=bbox,
images=images,
valid_span=valid_span,
)
sequence_output = outputs[0][:, 0, :]
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
magic_pdf/model/pek_sub_modules/layoutlmv3/layoutlmft/models/layoutlmv3/tokenization_layoutlmv3.py 0 → 100644
View file @ 1fac6aa7
# coding=utf-8
# Copyright 2018 The Open AI Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization classes for LayoutLMv3, refer to RoBERTa."""
from transformers.models.roberta import RobertaTokenizer
from transformers.utils import logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {
"vocab_file": "vocab.json",
"merges_file": "merges.txt",
}
class LayoutLMv3Tokenizer(RobertaTokenizer):
vocab_files_names = VOCAB_FILES_NAMES
# pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
# max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
model_input_names = ["input_ids", "attention_mask"]
magic_pdf/model/pek_sub_modules/layoutlmv3/layoutlmft/models/layoutlmv3/tokenization_layoutlmv3_fast.py 0 → 100644
View file @ 1fac6aa7
# coding=utf-8
# Copyright 2018 The Open AI Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Fast Tokenization classes for LayoutLMv3, refer to RoBERTa."""
from transformers.models.roberta.tokenization_roberta_fast import RobertaTokenizerFast
from transformers.utils import logging
from .tokenization_layoutlmv3 import LayoutLMv3Tokenizer
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "vocab.json", "merges_file": "merges.txt", "tokenizer_file": "tokenizer.json"}
class LayoutLMv3TokenizerFast(RobertaTokenizerFast):
vocab_files_names = VOCAB_FILES_NAMES
# pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
# max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
model_input_names = ["input_ids", "attention_mask"]
slow_tokenizer_class = LayoutLMv3Tokenizer
magic_pdf/model/pek_sub_modules/layoutlmv3/model_init.py 0 → 100644
View file @ 1fac6aa7
from .visualizer import Visualizer
from .rcnn_vl import *
from .backbone import *
from detectron2.config import get_cfg
from detectron2.config import CfgNode as CN
from detectron2.data import MetadataCatalog, DatasetCatalog
from detectron2.data.datasets import register_coco_instances
from detectron2.engine import DefaultTrainer, default_argument_parser, default_setup, launch, DefaultPredictor
def add_vit_config(cfg):
"""
Add config for VIT.
"""
_C = cfg
_C.MODEL.VIT = CN()
# CoaT model name.
_C.MODEL.VIT.NAME = ""
# Output features from CoaT backbone.
_C.MODEL.VIT.OUT_FEATURES = ["layer3", "layer5", "layer7", "layer11"]
_C.MODEL.VIT.IMG_SIZE = [224, 224]
_C.MODEL.VIT.POS_TYPE = "shared_rel"
_C.MODEL.VIT.DROP_PATH = 0.
_C.MODEL.VIT.MODEL_KWARGS = "{}"
_C.SOLVER.OPTIMIZER = "ADAMW"
_C.SOLVER.BACKBONE_MULTIPLIER = 1.0
_C.AUG = CN()
_C.AUG.DETR = False
_C.MODEL.IMAGE_ONLY = True
_C.PUBLAYNET_DATA_DIR_TRAIN = ""
_C.PUBLAYNET_DATA_DIR_TEST = ""
_C.FOOTNOTE_DATA_DIR_TRAIN = ""
_C.FOOTNOTE_DATA_DIR_VAL = ""
_C.SCIHUB_DATA_DIR_TRAIN = ""
_C.SCIHUB_DATA_DIR_TEST = ""
_C.JIAOCAI_DATA_DIR_TRAIN = ""
_C.JIAOCAI_DATA_DIR_TEST = ""
_C.ICDAR_DATA_DIR_TRAIN = ""
_C.ICDAR_DATA_DIR_TEST = ""
_C.M6DOC_DATA_DIR_TEST = ""
_C.DOCSTRUCTBENCH_DATA_DIR_TEST = ""
_C.DOCSTRUCTBENCHv2_DATA_DIR_TEST = ""
_C.CACHE_DIR = ""
_C.MODEL.CONFIG_PATH = ""
# effective update steps would be MAX_ITER/GRADIENT_ACCUMULATION_STEPS
# maybe need to set MAX_ITER *= GRADIENT_ACCUMULATION_STEPS
_C.SOLVER.GRADIENT_ACCUMULATION_STEPS = 1
def setup(args):
"""
Create configs and perform basic setups.
"""
cfg = get_cfg()
# add_coat_config(cfg)
add_vit_config(cfg)
cfg.merge_from_file(args.config_file)
cfg.MODEL.ROI_HEADS.SCORE_THRESH_TEST = 0.2 # set threshold for this model
cfg.merge_from_list(args.opts)
cfg.freeze()
default_setup(cfg, args)
register_coco_instances(
"scihub_train",
{},
cfg.SCIHUB_DATA_DIR_TRAIN + ".json",
cfg.SCIHUB_DATA_DIR_TRAIN
)
return cfg
class DotDict(dict):
def __init__(self, *args, **kwargs):
super(DotDict, self).__init__(*args, **kwargs)
def __getattr__(self, key):
if key not in self.keys():
return None
value = self[key]
if isinstance(value, dict):
value = DotDict(value)
return value
def __setattr__(self, key, value):
self[key] = value
class Layoutlmv3_Predictor(object):
def __init__(self, weights, config_file):
layout_args = {
"config_file": config_file,
"resume": False,
"eval_only": False,
"num_gpus": 1,
"num_machines": 1,
"machine_rank": 0,
"dist_url": "tcp://127.0.0.1:57823",
"opts": ["MODEL.WEIGHTS", weights],
}
layout_args = DotDict(layout_args)
cfg = setup(layout_args)
self.mapping = ["title", "plain text", "abandon", "figure", "figure_caption", "table", "table_caption", "table_footnote", "isolate_formula", "formula_caption"]
MetadataCatalog.get(cfg.DATASETS.TRAIN[0]).thing_classes = self.mapping
self.predictor = DefaultPredictor(cfg)
def __call__(self, image, ignore_catids=[]):
page_layout_result = {
"layout_dets": []
}
outputs = self.predictor(image)
boxes = outputs["instances"].to("cpu")._fields["pred_boxes"].tensor.tolist()
labels = outputs["instances"].to("cpu")._fields["pred_classes"].tolist()
scores = outputs["instances"].to("cpu")._fields["scores"].tolist()
for bbox_idx in range(len(boxes)):
if labels[bbox_idx] in ignore_catids:
continue
page_layout_result["layout_dets"].append({
"category_id": labels[bbox_idx],
"poly": [
boxes[bbox_idx][0], boxes[bbox_idx][1],
boxes[bbox_idx][2], boxes[bbox_idx][1],
boxes[bbox_idx][2], boxes[bbox_idx][3],
boxes[bbox_idx][0], boxes[bbox_idx][3],
],
"score": scores[bbox_idx]
})
return page_layout_result
\ No newline at end of file
magic_pdf/model/pek_sub_modules/layoutlmv3/rcnn_vl.py 0 → 100644
View file @ 1fac6aa7
# Copyright (c) Facebook, Inc. and its affiliates.
import logging
import numpy as np
from typing import Dict, List, Optional, Tuple
import torch
from torch import nn
from detectron2.config import configurable
from detectron2.structures import ImageList, Instances
from detectron2.utils.events import get_event_storage
from detectron2.modeling.backbone import Backbone, build_backbone
from detectron2.modeling.meta_arch.build import META_ARCH_REGISTRY
from detectron2.modeling.meta_arch import GeneralizedRCNN
from detectron2.modeling.postprocessing import detector_postprocess
from detectron2.modeling.roi_heads.fast_rcnn import fast_rcnn_inference_single_image
from contextlib import contextmanager
from itertools import count
@META_ARCH_REGISTRY.register()
class VLGeneralizedRCNN(GeneralizedRCNN):
"""
Generalized R-CNN. Any models that contains the following three components:
1. Per-image feature extraction (aka backbone)
2. Region proposal generation
3. Per-region feature extraction and prediction
"""
def forward(self, batched_inputs: List[Dict[str, torch.Tensor]]):
"""
Args:
batched_inputs: a list, batched outputs of :class:`DatasetMapper` .
Each item in the list contains the inputs for one image.
For now, each item in the list is a dict that contains:
* image: Tensor, image in (C, H, W) format.
* instances (optional): groundtruth :class:`Instances`
* proposals (optional): :class:`Instances`, precomputed proposals.
Other information that's included in the original dicts, such as:
* "height", "width" (int): the output resolution of the model, used in inference.
See :meth:`postprocess` for details.
Returns:
list[dict]:
Each dict is the output for one input image.
The dict contains one key "instances" whose value is a :class:`Instances`.
The :class:`Instances` object has the following keys:
"pred_boxes", "pred_classes", "scores", "pred_masks", "pred_keypoints"
"""
if not self.training:
return self.inference(batched_inputs)
images = self.preprocess_image(batched_inputs)
if "instances" in batched_inputs[0]:
gt_instances = [x["instances"].to(self.device) for x in batched_inputs]
else:
gt_instances = None
# features = self.backbone(images.tensor)
input = self.get_batch(batched_inputs, images)
features = self.backbone(input)
if self.proposal_generator is not None:
proposals, proposal_losses = self.proposal_generator(images, features, gt_instances)
else:
assert "proposals" in batched_inputs[0]
proposals = [x["proposals"].to(self.device) for x in batched_inputs]
proposal_losses = {}
_, detector_losses = self.roi_heads(images, features, proposals, gt_instances)
if self.vis_period > 0:
storage = get_event_storage()
if storage.iter % self.vis_period == 0:
self.visualize_training(batched_inputs, proposals)
losses = {}
losses.update(detector_losses)
losses.update(proposal_losses)
return losses
def inference(
self,
batched_inputs: List[Dict[str, torch.Tensor]],
detected_instances: Optional[List[Instances]] = None,
do_postprocess: bool = True,
):
"""
Run inference on the given inputs.
Args:
batched_inputs (list[dict]): same as in :meth:`forward`
detected_instances (None or list[Instances]): if not None, it
contains an `Instances` object per image. The `Instances`
object contains "pred_boxes" and "pred_classes" which are
known boxes in the image.
The inference will then skip the detection of bounding boxes,
and only predict other per-ROI outputs.
do_postprocess (bool): whether to apply post-processing on the outputs.
Returns:
When do_postprocess=True, same as in :meth:`forward`.
Otherwise, a list[Instances] containing raw network outputs.
"""
assert not self.training
images = self.preprocess_image(batched_inputs)
# features = self.backbone(images.tensor)
input = self.get_batch(batched_inputs, images)
features = self.backbone(input)
if detected_instances is None:
if self.proposal_generator is not None:
proposals, _ = self.proposal_generator(images, features, None)
else:
assert "proposals" in batched_inputs[0]
proposals = [x["proposals"].to(self.device) for x in batched_inputs]
results, _ = self.roi_heads(images, features, proposals, None)
else:
detected_instances = [x.to(self.device) for x in detected_instances]
results = self.roi_heads.forward_with_given_boxes(features, detected_instances)
if do_postprocess:
assert not torch.jit.is_scripting(), "Scripting is not supported for postprocess."
return GeneralizedRCNN._postprocess(results, batched_inputs, images.image_sizes)
else:
return results
def get_batch(self, examples, images):
if len(examples) >= 1 and "bbox" not in examples[0]: # image_only
return {"images": images.tensor}
return input
def _batch_inference(self, batched_inputs, detected_instances=None):
"""
Execute inference on a list of inputs,
using batch size = self.batch_size (e.g., 2), instead of the length of the list.
Inputs & outputs have the same format as :meth:`GeneralizedRCNN.inference`
"""
if detected_instances is None:
detected_instances = [None] * len(batched_inputs)
outputs = []
inputs, instances = [], []
for idx, input, instance in zip(count(), batched_inputs, detected_instances):
inputs.append(input)
instances.append(instance)
if len(inputs) == 2 or idx == len(batched_inputs) - 1:
outputs.extend(
self.inference(
inputs,
instances if instances[0] is not None else None,
do_postprocess=True, # False
)
)
inputs, instances = [], []
return outputs
magic_pdf/model/pek_sub_modules/layoutlmv3/visualizer.py 0 → 100644
View file @ 1fac6aa7
# Copyright (c) Facebook, Inc. and its affiliates.
import colorsys
import logging
import math
import numpy as np
from enum import Enum, unique
import cv2
import matplotlib as mpl
import matplotlib.colors as mplc
import matplotlib.figure as mplfigure
import pycocotools.mask as mask_util
import torch
from matplotlib.backends.backend_agg import FigureCanvasAgg
from PIL import Image
from detectron2.data import MetadataCatalog
from detectron2.structures import BitMasks, Boxes, BoxMode, Keypoints, PolygonMasks, RotatedBoxes
from detectron2.utils.file_io import PathManager
from detectron2.utils.colormap import random_color
import pdb
logger = logging.getLogger(__name__)
__all__ = ["ColorMode", "VisImage", "Visualizer"]
_SMALL_OBJECT_AREA_THRESH = 1000
_LARGE_MASK_AREA_THRESH = 120000
_OFF_WHITE = (1.0, 1.0, 240.0 / 255)
_BLACK = (0, 0, 0)
_RED = (1.0, 0, 0)
_KEYPOINT_THRESHOLD = 0.05
#CLASS_NAMES = ["footnote", "footer", "header"]
@unique
class ColorMode(Enum):
"""
Enum of different color modes to use for instance visualizations.
"""
IMAGE = 0
"""
Picks a random color for every instance and overlay segmentations with low opacity.
"""
SEGMENTATION = 1
"""
Let instances of the same category have similar colors
(from metadata.thing_colors), and overlay them with
high opacity. This provides more attention on the quality of segmentation.
"""
IMAGE_BW = 2
"""
Same as IMAGE, but convert all areas without masks to gray-scale.
Only available for drawing per-instance mask predictions.
"""
class GenericMask:
"""
Attribute:
polygons (list[ndarray]): list[ndarray]: polygons for this mask.
Each ndarray has format [x, y, x, y, ...]
mask (ndarray): a binary mask
"""
def __init__(self, mask_or_polygons, height, width):
self._mask = self._polygons = self._has_holes = None
self.height = height
self.width = width
m = mask_or_polygons
if isinstance(m, dict):
# RLEs
assert "counts" in m and "size" in m
if isinstance(m["counts"], list): # uncompressed RLEs
h, w = m["size"]
assert h == height and w == width
m = mask_util.frPyObjects(m, h, w)
self._mask = mask_util.decode(m)[:, :]
return
if isinstance(m, list): # list[ndarray]
self._polygons = [np.asarray(x).reshape(-1) for x in m]
return
if isinstance(m, np.ndarray): # assumed to be a binary mask
assert m.shape[1] != 2, m.shape
assert m.shape == (
height,
width,
), f"mask shape: {m.shape}, target dims: {height}, {width}"
self._mask = m.astype("uint8")
return
raise ValueError("GenericMask cannot handle object {} of type '{}'".format(m, type(m)))
@property
def mask(self):
if self._mask is None:
self._mask = self.polygons_to_mask(self._polygons)
return self._mask
@property
def polygons(self):
if self._polygons is None:
self._polygons, self._has_holes = self.mask_to_polygons(self._mask)
return self._polygons
@property
def has_holes(self):
if self._has_holes is None:
if self._mask is not None:
self._polygons, self._has_holes = self.mask_to_polygons(self._mask)
else:
self._has_holes = False # if original format is polygon, does not have holes
return self._has_holes
def mask_to_polygons(self, mask):
# cv2.RETR_CCOMP flag retrieves all the contours and arranges them to a 2-level
# hierarchy. External contours (boundary) of the object are placed in hierarchy-1.
# Internal contours (holes) are placed in hierarchy-2.
# cv2.CHAIN_APPROX_NONE flag gets vertices of polygons from contours.
mask = np.ascontiguousarray(mask) # some versions of cv2 does not support incontiguous arr
res = cv2.findContours(mask.astype("uint8"), cv2.RETR_CCOMP, cv2.CHAIN_APPROX_NONE)
hierarchy = res[-1]
if hierarchy is None: # empty mask
return [], False
has_holes = (hierarchy.reshape(-1, 4)[:, 3] >= 0).sum() > 0
res = res[-2]
res = [x.flatten() for x in res]
# These coordinates from OpenCV are integers in range [0, W-1 or H-1].
# We add 0.5 to turn them into real-value coordinate space. A better solution
# would be to first +0.5 and then dilate the returned polygon by 0.5.
res = [x + 0.5 for x in res if len(x) >= 6]
return res, has_holes
def polygons_to_mask(self, polygons):
rle = mask_util.frPyObjects(polygons, self.height, self.width)
rle = mask_util.merge(rle)
return mask_util.decode(rle)[:, :]
def area(self):
return self.mask.sum()
def bbox(self):
p = mask_util.frPyObjects(self.polygons, self.height, self.width)
p = mask_util.merge(p)
bbox = mask_util.toBbox(p)
bbox[2] += bbox[0]
bbox[3] += bbox[1]
return bbox
class _PanopticPrediction:
"""
Unify different panoptic annotation/prediction formats
"""
def __init__(self, panoptic_seg, segments_info, metadata=None):
if segments_info is None:
assert metadata is not None
# If "segments_info" is None, we assume "panoptic_img" is a
# H*W int32 image storing the panoptic_id in the format of
# category_id * label_divisor + instance_id. We reserve -1 for
# VOID label.
label_divisor = metadata.label_divisor
segments_info = []
for panoptic_label in np.unique(panoptic_seg.numpy()):
if panoptic_label == -1:
# VOID region.
continue
pred_class = panoptic_label // label_divisor
isthing = pred_class in metadata.thing_dataset_id_to_contiguous_id.values()
segments_info.append(
{
"id": int(panoptic_label),
"category_id": int(pred_class),
"isthing": bool(isthing),
}
)
del metadata
self._seg = panoptic_seg
self._sinfo = {s["id"]: s for s in segments_info} # seg id -> seg info
segment_ids, areas = torch.unique(panoptic_seg, sorted=True, return_counts=True)
areas = areas.numpy()
sorted_idxs = np.argsort(-areas)
self._seg_ids, self._seg_areas = segment_ids[sorted_idxs], areas[sorted_idxs]
self._seg_ids = self._seg_ids.tolist()
for sid, area in zip(self._seg_ids, self._seg_areas):
if sid in self._sinfo:
self._sinfo[sid]["area"] = float(area)
def non_empty_mask(self):
"""
Returns:
(H, W) array, a mask for all pixels that have a prediction
"""
empty_ids = []
for id in self._seg_ids:
if id not in self._sinfo:
empty_ids.append(id)
if len(empty_ids) == 0:
return np.zeros(self._seg.shape, dtype=np.uint8)
assert (
len(empty_ids) == 1
), ">1 ids corresponds to no labels. This is currently not supported"
return (self._seg != empty_ids[0]).numpy().astype(np.bool)
def semantic_masks(self):
for sid in self._seg_ids:
sinfo = self._sinfo.get(sid)
if sinfo is None or sinfo["isthing"]:
# Some pixels (e.g. id 0 in PanopticFPN) have no instance or semantic predictions.
continue
yield (self._seg == sid).numpy().astype(np.bool), sinfo
def instance_masks(self):
for sid in self._seg_ids:
sinfo = self._sinfo.get(sid)
if sinfo is None or not sinfo["isthing"]:
continue
mask = (self._seg == sid).numpy().astype(np.bool)
if mask.sum() > 0:
yield mask, sinfo
def _create_text_labels(classes, scores, class_names, is_crowd=None):
"""
Args:
classes (list[int] or None):
scores (list[float] or None):
class_names (list[str] or None):
is_crowd (list[bool] or None):
Returns:
list[str] or None
"""
#class_names = CLASS_NAMES
labels = None
if classes is not None:
if class_names is not None and len(class_names) > 0:
labels = [class_names[i] for i in classes]
else:
labels = [str(i) for i in classes]
if scores is not None:
if labels is None:
labels = ["{:.0f}%".format(s * 100) for s in scores]
else:
labels = ["{} {:.0f}%".format(l, s * 100) for l, s in zip(labels, scores)]
if labels is not None and is_crowd is not None:
labels = [l + ("|crowd" if crowd else "") for l, crowd in zip(labels, is_crowd)]
return labels
class VisImage:
def __init__(self, img, scale=1.0):
"""
Args:
img (ndarray): an RGB image of shape (H, W, 3) in range [0, 255].
scale (float): scale the input image
"""
self.img = img
self.scale = scale
self.width, self.height = img.shape[1], img.shape[0]
self._setup_figure(img)
def _setup_figure(self, img):
"""
Args:
Same as in :meth:`__init__()`.
Returns:
fig (matplotlib.pyplot.figure): top level container for all the image plot elements.
ax (matplotlib.pyplot.Axes): contains figure elements and sets the coordinate system.
"""
fig = mplfigure.Figure(frameon=False)
self.dpi = fig.get_dpi()
# add a small 1e-2 to avoid precision lost due to matplotlib's truncation
# (https://github.com/matplotlib/matplotlib/issues/15363)
fig.set_size_inches(
(self.width * self.scale + 1e-2) / self.dpi,
(self.height * self.scale + 1e-2) / self.dpi,
)
self.canvas = FigureCanvasAgg(fig)
# self.canvas = mpl.backends.backend_cairo.FigureCanvasCairo(fig)
ax = fig.add_axes([0.0, 0.0, 1.0, 1.0])
ax.axis("off")
self.fig = fig
self.ax = ax
self.reset_image(img)
def reset_image(self, img):
"""
Args:
img: same as in __init__
"""
img = img.astype("uint8")
self.ax.imshow(img, extent=(0, self.width, self.height, 0), interpolation="nearest")
def save(self, filepath):
"""
Args:
filepath (str): a string that contains the absolute path, including the file name, where
the visualized image will be saved.
"""
self.fig.savefig(filepath)
def get_image(self):
"""
Returns:
ndarray:
the visualized image of shape (H, W, 3) (RGB) in uint8 type.
The shape is scaled w.r.t the input image using the given `scale` argument.
"""
canvas = self.canvas
s, (width, height) = canvas.print_to_buffer()
# buf = io.BytesIO() # works for cairo backend
# canvas.print_rgba(buf)
# width, height = self.width, self.height
# s = buf.getvalue()
buffer = np.frombuffer(s, dtype="uint8")
img_rgba = buffer.reshape(height, width, 4)
rgb, alpha = np.split(img_rgba, [3], axis=2)
return rgb.astype("uint8")
class Visualizer:
"""
Visualizer that draws data about detection/segmentation on images.
It contains methods like `draw_{text,box,circle,line,binary_mask,polygon}`
that draw primitive objects to images, as well as high-level wrappers like
`draw_{instance_predictions,sem_seg,panoptic_seg_predictions,dataset_dict}`
that draw composite data in some pre-defined style.
Note that the exact visualization style for the high-level wrappers are subject to change.
Style such as color, opacity, label contents, visibility of labels, or even the visibility
of objects themselves (e.g. when the object is too small) may change according
to different heuristics, as long as the results still look visually reasonable.
To obtain a consistent style, you can implement custom drawing functions with the
abovementioned primitive methods instead. If you need more customized visualization
styles, you can process the data yourself following their format documented in
tutorials (:doc:`/tutorials/models`, :doc:`/tutorials/datasets`). This class does not
intend to satisfy everyone's preference on drawing styles.
This visualizer focuses on high rendering quality rather than performance. It is not
designed to be used for real-time applications.
"""
# TODO implement a fast, rasterized version using OpenCV
def __init__(self, img_rgb, metadata=None, scale=1.0, instance_mode=ColorMode.IMAGE):
"""
Args:
img_rgb: a numpy array of shape (H, W, C), where H and W correspond to
the height and width of the image respectively. C is the number of
color channels. The image is required to be in RGB format since that
is a requirement of the Matplotlib library. The image is also expected
to be in the range [0, 255].
metadata (Metadata): dataset metadata (e.g. class names and colors)
instance_mode (ColorMode): defines one of the pre-defined style for drawing
instances on an image.
"""
self.img = np.asarray(img_rgb).clip(0, 255).astype(np.uint8)
if metadata is None:
metadata = MetadataCatalog.get("__nonexist__")
self.metadata = metadata
self.output = VisImage(self.img, scale=scale)
self.cpu_device = torch.device("cpu")
# too small texts are useless, therefore clamp to 9
self._default_font_size = max(
np.sqrt(self.output.height * self.output.width) // 90, 10 // scale
)
self._instance_mode = instance_mode
self.keypoint_threshold = _KEYPOINT_THRESHOLD
def draw_instance_predictions(self, predictions):
"""
Draw instance-level prediction results on an image.
Args:
predictions (Instances): the output of an instance detection/segmentation
model. Following fields will be used to draw:
"pred_boxes", "pred_classes", "scores", "pred_masks" (or "pred_masks_rle").
Returns:
output (VisImage): image object with visualizations.
"""
boxes = predictions.pred_boxes if predictions.has("pred_boxes") else None
scores = predictions.scores if predictions.has("scores") else None
classes = predictions.pred_classes.tolist() if predictions.has("pred_classes") else None
labels = _create_text_labels(classes, scores, self.metadata.get("thing_classes", None))
keypoints = predictions.pred_keypoints if predictions.has("pred_keypoints") else None
if predictions.has("pred_masks"):
masks = np.asarray(predictions.pred_masks)
masks = [GenericMask(x, self.output.height, self.output.width) for x in masks]
else:
masks = None
if self._instance_mode == ColorMode.SEGMENTATION and self.metadata.get("thing_colors"):
colors = [
self._jitter([x / 255 for x in self.metadata.thing_colors[c]]) for c in classes
]
alpha = 0.8
else:
colors = None
alpha = 0.5
if self._instance_mode == ColorMode.IMAGE_BW:
self.output.reset_image(
self._create_grayscale_image(
(predictions.pred_masks.any(dim=0) > 0).numpy()
if predictions.has("pred_masks")
else None
)
)
alpha = 0.3
self.overlay_instances(
masks=masks,
boxes=boxes,
labels=labels,
keypoints=keypoints,
assigned_colors=colors,
alpha=alpha,
)
return self.output
def draw_sem_seg(self, sem_seg, area_threshold=None, alpha=0.8):
"""
Draw semantic segmentation predictions/labels.
Args:
sem_seg (Tensor or ndarray): the segmentation of shape (H, W).
Each value is the integer label of the pixel.
area_threshold (int): segments with less than `area_threshold` are not drawn.
alpha (float): the larger it is, the more opaque the segmentations are.
Returns:
output (VisImage): image object with visualizations.
"""
if isinstance(sem_seg, torch.Tensor):
sem_seg = sem_seg.numpy()
labels, areas = np.unique(sem_seg, return_counts=True)
sorted_idxs = np.argsort(-areas).tolist()
labels = labels[sorted_idxs]
for label in filter(lambda l: l < len(self.metadata.stuff_classes), labels):
try:
mask_color = [x / 255 for x in self.metadata.stuff_colors[label]]
except (AttributeError, IndexError):
mask_color = None
binary_mask = (sem_seg == label).astype(np.uint8)
text = self.metadata.stuff_classes[label]
self.draw_binary_mask(
binary_mask,
color=mask_color,
edge_color=_OFF_WHITE,
text=text,
alpha=alpha,
area_threshold=area_threshold,
)
return self.output
def draw_panoptic_seg(self, panoptic_seg, segments_info, area_threshold=None, alpha=0.7):
"""
Draw panoptic prediction annotations or results.
Args:
panoptic_seg (Tensor): of shape (height, width) where the values are ids for each
segment.
segments_info (list[dict] or None): Describe each segment in `panoptic_seg`.
If it is a ``list[dict]``, each dict contains keys "id", "category_id".
If None, category id of each pixel is computed by
``pixel // metadata.label_divisor``.
area_threshold (int): stuff segments with less than `area_threshold` are not drawn.
Returns:
output (VisImage): image object with visualizations.
"""
pred = _PanopticPrediction(panoptic_seg, segments_info, self.metadata)
if self._instance_mode == ColorMode.IMAGE_BW:
self.output.reset_image(self._create_grayscale_image(pred.non_empty_mask()))
# draw mask for all semantic segments first i.e. "stuff"
for mask, sinfo in pred.semantic_masks():
category_idx = sinfo["category_id"]
try:
mask_color = [x / 255 for x in self.metadata.stuff_colors[category_idx]]
except AttributeError:
mask_color = None
text = self.metadata.stuff_classes[category_idx]
self.draw_binary_mask(
mask,
color=mask_color,
edge_color=_OFF_WHITE,
text=text,
alpha=alpha,
area_threshold=area_threshold,
)
# draw mask for all instances second
all_instances = list(pred.instance_masks())
if len(all_instances) == 0:
return self.output
masks, sinfo = list(zip(*all_instances))
category_ids = [x["category_id"] for x in sinfo]
try:
scores = [x["score"] for x in sinfo]
except KeyError:
scores = None
labels = _create_text_labels(
category_ids, scores, self.metadata.thing_classes, [x.get("iscrowd", 0) for x in sinfo]
)
try:
colors = [
self._jitter([x / 255 for x in self.metadata.thing_colors[c]]) for c in category_ids
]
except AttributeError:
colors = None
self.overlay_instances(masks=masks, labels=labels, assigned_colors=colors, alpha=alpha)
return self.output
draw_panoptic_seg_predictions = draw_panoptic_seg # backward compatibility
def draw_dataset_dict(self, dic):
"""
Draw annotations/segmentaions in Detectron2 Dataset format.
Args:
dic (dict): annotation/segmentation data of one image, in Detectron2 Dataset format.
Returns:
output (VisImage): image object with visualizations.
"""
annos = dic.get("annotations", None)
if annos:
if "segmentation" in annos[0]:
masks = [x["segmentation"] for x in annos]
else:
masks = None
if "keypoints" in annos[0]:
keypts = [x["keypoints"] for x in annos]
keypts = np.array(keypts).reshape(len(annos), -1, 3)
else:
keypts = None
boxes = [
BoxMode.convert(x["bbox"], x["bbox_mode"], BoxMode.XYXY_ABS)
if len(x["bbox"]) == 4
else x["bbox"]
for x in annos
]
colors = None
category_ids = [x["category_id"] for x in annos]
if self._instance_mode == ColorMode.SEGMENTATION and self.metadata.get("thing_colors"):
colors = [
self._jitter([x / 255 for x in self.metadata.thing_colors[c]])
for c in category_ids
]
names = self.metadata.get("thing_classes", None)
labels = _create_text_labels(
category_ids,
scores=None,
class_names=names,
is_crowd=[x.get("iscrowd", 0) for x in annos],
)
self.overlay_instances(
labels=labels, boxes=boxes, masks=masks, keypoints=keypts, assigned_colors=colors
)
sem_seg = dic.get("sem_seg", None)
if sem_seg is None and "sem_seg_file_name" in dic:
with PathManager.open(dic["sem_seg_file_name"], "rb") as f:
sem_seg = Image.open(f)
sem_seg = np.asarray(sem_seg, dtype="uint8")
if sem_seg is not None:
self.draw_sem_seg(sem_seg, area_threshold=0, alpha=0.5)
pan_seg = dic.get("pan_seg", None)
if pan_seg is None and "pan_seg_file_name" in dic:
with PathManager.open(dic["pan_seg_file_name"], "rb") as f:
pan_seg = Image.open(f)
pan_seg = np.asarray(pan_seg)
from panopticapi.utils import rgb2id
pan_seg = rgb2id(pan_seg)
if pan_seg is not None:
segments_info = dic["segments_info"]
pan_seg = torch.tensor(pan_seg)
self.draw_panoptic_seg(pan_seg, segments_info, area_threshold=0, alpha=0.5)
return self.output
def overlay_instances(
self,
*,
boxes=None,
labels=None,
masks=None,
keypoints=None,
assigned_colors=None,
alpha=0.5,
):
"""
Args:
boxes (Boxes, RotatedBoxes or ndarray): either a :class:`Boxes`,
or an Nx4 numpy array of XYXY_ABS format for the N objects in a single image,
or a :class:`RotatedBoxes`,
or an Nx5 numpy array of (x_center, y_center, width, height, angle_degrees) format
for the N objects in a single image,
labels (list[str]): the text to be displayed for each instance.
masks (masks-like object): Supported types are:
* :class:`detectron2.structures.PolygonMasks`,
:class:`detectron2.structures.BitMasks`.
* list[list[ndarray]]: contains the segmentation masks for all objects in one image.
The first level of the list corresponds to individual instances. The second
level to all the polygon that compose the instance, and the third level
to the polygon coordinates. The third level should have the format of
[x0, y0, x1, y1, ..., xn, yn] (n >= 3).
* list[ndarray]: each ndarray is a binary mask of shape (H, W).
* list[dict]: each dict is a COCO-style RLE.
keypoints (Keypoint or array like): an array-like object of shape (N, K, 3),
where the N is the number of instances and K is the number of keypoints.
The last dimension corresponds to (x, y, visibility or score).
assigned_colors (list[matplotlib.colors]): a list of colors, where each color
corresponds to each mask or box in the image. Refer to 'matplotlib.colors'
for full list of formats that the colors are accepted in.
Returns:
output (VisImage): image object with visualizations.
"""
num_instances = 0
if boxes is not None:
boxes = self._convert_boxes(boxes)
num_instances = len(boxes)
if masks is not None:
masks = self._convert_masks(masks)
if num_instances:
assert len(masks) == num_instances
else:
num_instances = len(masks)
if keypoints is not None:
if num_instances:
assert len(keypoints) == num_instances
else:
num_instances = len(keypoints)
keypoints = self._convert_keypoints(keypoints)
if labels is not None:
assert len(labels) == num_instances
if assigned_colors is None:
assigned_colors = [random_color(rgb=True, maximum=1) for _ in range(num_instances)]
if num_instances == 0:
return self.output
if boxes is not None and boxes.shape[1] == 5:
return self.overlay_rotated_instances(
boxes=boxes, labels=labels, assigned_colors=assigned_colors
)
# Display in largest to smallest order to reduce occlusion.
areas = None
if boxes is not None:
areas = np.prod(boxes[:, 2:] - boxes[:, :2], axis=1)
elif masks is not None:
areas = np.asarray([x.area() for x in masks])
if areas is not None:
sorted_idxs = np.argsort(-areas).tolist()
# Re-order overlapped instances in descending order.
boxes = boxes[sorted_idxs] if boxes is not None else None
labels = [labels[k] for k in sorted_idxs] if labels is not None else None
masks = [masks[idx] for idx in sorted_idxs] if masks is not None else None
assigned_colors = [assigned_colors[idx] for idx in sorted_idxs]
keypoints = keypoints[sorted_idxs] if keypoints is not None else None
for i in range(num_instances):
color = assigned_colors[i]
if boxes is not None:
self.draw_box(boxes[i], edge_color=color)
if masks is not None:
for segment in masks[i].polygons:
self.draw_polygon(segment.reshape(-1, 2), color, alpha=alpha)
if labels is not None:
# first get a box
if boxes is not None:
x0, y0, x1, y1 = boxes[i]
text_pos = (x0, y0) # if drawing boxes, put text on the box corner.
horiz_align = "left"
elif masks is not None:
# skip small mask without polygon
if len(masks[i].polygons) == 0:
continue
x0, y0, x1, y1 = masks[i].bbox()
# draw text in the center (defined by median) when box is not drawn
# median is less sensitive to outliers.
text_pos = np.median(masks[i].mask.nonzero(), axis=1)[::-1]
horiz_align = "center"
else:
continue # drawing the box confidence for keypoints isn't very useful.
# for small objects, draw text at the side to avoid occlusion
instance_area = (y1 - y0) * (x1 - x0)
if (
instance_area < _SMALL_OBJECT_AREA_THRESH * self.output.scale
or y1 - y0 < 40 * self.output.scale
):
if y1 >= self.output.height - 5:
text_pos = (x1, y0)
else:
text_pos = (x0, y1)
height_ratio = (y1 - y0) / np.sqrt(self.output.height * self.output.width)
lighter_color = self._change_color_brightness(color, brightness_factor=0.7)
font_size = (
np.clip((height_ratio - 0.02) / 0.08 + 1, 1.2, 2)
* 0.5
* self._default_font_size
)
self.draw_text(
labels[i],
text_pos,
color=lighter_color,
horizontal_alignment=horiz_align,
font_size=font_size,
)
# draw keypoints
if keypoints is not None:
for keypoints_per_instance in keypoints:
self.draw_and_connect_keypoints(keypoints_per_instance)
return self.output
def overlay_rotated_instances(self, boxes=None, labels=None, assigned_colors=None):
"""
Args:
boxes (ndarray): an Nx5 numpy array of
(x_center, y_center, width, height, angle_degrees) format
for the N objects in a single image.
labels (list[str]): the text to be displayed for each instance.
assigned_colors (list[matplotlib.colors]): a list of colors, where each color
corresponds to each mask or box in the image. Refer to 'matplotlib.colors'
for full list of formats that the colors are accepted in.
Returns:
output (VisImage): image object with visualizations.
"""
num_instances = len(boxes)
if assigned_colors is None:
assigned_colors = [random_color(rgb=True, maximum=1) for _ in range(num_instances)]
if num_instances == 0:
return self.output
# Display in largest to smallest order to reduce occlusion.
if boxes is not None:
areas = boxes[:, 2] * boxes[:, 3]
sorted_idxs = np.argsort(-areas).tolist()
# Re-order overlapped instances in descending order.
boxes = boxes[sorted_idxs]
labels = [labels[k] for k in sorted_idxs] if labels is not None else None
colors = [assigned_colors[idx] for idx in sorted_idxs]
for i in range(num_instances):
self.draw_rotated_box_with_label(
boxes[i], edge_color=colors[i], label=labels[i] if labels is not None else None
)
return self.output
def draw_and_connect_keypoints(self, keypoints):
"""
Draws keypoints of an instance and follows the rules for keypoint connections
to draw lines between appropriate keypoints. This follows color heuristics for
line color.
Args:
keypoints (Tensor): a tensor of shape (K, 3), where K is the number of keypoints
and the last dimension corresponds to (x, y, probability).
Returns:
output (VisImage): image object with visualizations.
"""
visible = {}
keypoint_names = self.metadata.get("keypoint_names")
for idx, keypoint in enumerate(keypoints):
# draw keypoint
x, y, prob = keypoint
if prob > self.keypoint_threshold:
self.draw_circle((x, y), color=_RED)
if keypoint_names:
keypoint_name = keypoint_names[idx]
visible[keypoint_name] = (x, y)
if self.metadata.get("keypoint_connection_rules"):
for kp0, kp1, color in self.metadata.keypoint_connection_rules:
if kp0 in visible and kp1 in visible:
x0, y0 = visible[kp0]
x1, y1 = visible[kp1]
color = tuple(x / 255.0 for x in color)
self.draw_line([x0, x1], [y0, y1], color=color)
# draw lines from nose to mid-shoulder and mid-shoulder to mid-hip
# Note that this strategy is specific to person keypoints.
# For other keypoints, it should just do nothing
try:
ls_x, ls_y = visible["left_shoulder"]
rs_x, rs_y = visible["right_shoulder"]
mid_shoulder_x, mid_shoulder_y = (ls_x + rs_x) / 2, (ls_y + rs_y) / 2
except KeyError:
pass
else:
# draw line from nose to mid-shoulder
nose_x, nose_y = visible.get("nose", (None, None))
if nose_x is not None:
self.draw_line([nose_x, mid_shoulder_x], [nose_y, mid_shoulder_y], color=_RED)
try:
# draw line from mid-shoulder to mid-hip
lh_x, lh_y = visible["left_hip"]
rh_x, rh_y = visible["right_hip"]
except KeyError:
pass
else:
mid_hip_x, mid_hip_y = (lh_x + rh_x) / 2, (lh_y + rh_y) / 2
self.draw_line([mid_hip_x, mid_shoulder_x], [mid_hip_y, mid_shoulder_y], color=_RED)
return self.output
"""
Primitive drawing functions:
"""
def draw_text(
self,
text,
position,
*,
font_size=None,
color="g",
horizontal_alignment="center",
rotation=0,
):
"""
Args:
text (str): class label
position (tuple): a tuple of the x and y coordinates to place text on image.
font_size (int, optional): font of the text. If not provided, a font size
proportional to the image width is calculated and used.
color: color of the text. Refer to `matplotlib.colors` for full list
of formats that are accepted.
horizontal_alignment (str): see `matplotlib.text.Text`
rotation: rotation angle in degrees CCW
Returns:
output (VisImage): image object with text drawn.
"""
if not font_size:
font_size = self._default_font_size
# since the text background is dark, we don't want the text to be dark
color = np.maximum(list(mplc.to_rgb(color)), 0.2)
color[np.argmax(color)] = max(0.8, np.max(color))
x, y = position
self.output.ax.text(
x,
y,
text,
size=font_size * self.output.scale,
family="sans-serif",
bbox={"facecolor": "black", "alpha": 0.8, "pad": 0.7, "edgecolor": "none"},
verticalalignment="top",
horizontalalignment=horizontal_alignment,
color=color,
zorder=10,
rotation=rotation,
)
return self.output
def draw_box(self, box_coord, alpha=0.5, edge_color="g", line_style="-"):
"""
Args:
box_coord (tuple): a tuple containing x0, y0, x1, y1 coordinates, where x0 and y0
are the coordinates of the image's top left corner. x1 and y1 are the
coordinates of the image's bottom right corner.
alpha (float): blending efficient. Smaller values lead to more transparent masks.
edge_color: color of the outline of the box. Refer to `matplotlib.colors`
for full list of formats that are accepted.
line_style (string): the string to use to create the outline of the boxes.
Returns:
output (VisImage): image object with box drawn.
"""
x0, y0, x1, y1 = box_coord
width = x1 - x0
height = y1 - y0
linewidth = max(self._default_font_size / 4, 1)
self.output.ax.add_patch(
mpl.patches.Rectangle(
(x0, y0),
width,
height,
fill=False,
edgecolor=edge_color,
linewidth=linewidth * self.output.scale,
alpha=alpha,
linestyle=line_style,
)
)
return self.output
def draw_rotated_box_with_label(
self, rotated_box, alpha=0.5, edge_color="g", line_style="-", label=None
):
"""
Draw a rotated box with label on its top-left corner.
Args:
rotated_box (tuple): a tuple containing (cnt_x, cnt_y, w, h, angle),
where cnt_x and cnt_y are the center coordinates of the box.
w and h are the width and height of the box. angle represents how
many degrees the box is rotated CCW with regard to the 0-degree box.
alpha (float): blending efficient. Smaller values lead to more transparent masks.
edge_color: color of the outline of the box. Refer to `matplotlib.colors`
for full list of formats that are accepted.
line_style (string): the string to use to create the outline of the boxes.
label (string): label for rotated box. It will not be rendered when set to None.
Returns:
output (VisImage): image object with box drawn.
"""
cnt_x, cnt_y, w, h, angle = rotated_box
area = w * h
# use thinner lines when the box is small
linewidth = self._default_font_size / (
6 if area < _SMALL_OBJECT_AREA_THRESH * self.output.scale else 3
)
theta = angle * math.pi / 180.0
c = math.cos(theta)
s = math.sin(theta)
rect = [(-w / 2, h / 2), (-w / 2, -h / 2), (w / 2, -h / 2), (w / 2, h / 2)]
# x: left->right ; y: top->down
rotated_rect = [(s * yy + c * xx + cnt_x, c * yy - s * xx + cnt_y) for (xx, yy) in rect]
for k in range(4):
j = (k + 1) % 4
self.draw_line(
[rotated_rect[k][0], rotated_rect[j][0]],
[rotated_rect[k][1], rotated_rect[j][1]],
color=edge_color,
linestyle="--" if k == 1 else line_style,
linewidth=linewidth,
)
if label is not None:
text_pos = rotated_rect[1] # topleft corner
height_ratio = h / np.sqrt(self.output.height * self.output.width)
label_color = self._change_color_brightness(edge_color, brightness_factor=0.7)
font_size = (
np.clip((height_ratio - 0.02) / 0.08 + 1, 1.2, 2) * 0.5 * self._default_font_size
)
self.draw_text(label, text_pos, color=label_color, font_size=font_size, rotation=angle)
return self.output
def draw_circle(self, circle_coord, color, radius=3):
"""
Args:
circle_coord (list(int) or tuple(int)): contains the x and y coordinates
of the center of the circle.
color: color of the polygon. Refer to `matplotlib.colors` for a full list of
formats that are accepted.
radius (int): radius of the circle.
Returns:
output (VisImage): image object with box drawn.
"""
x, y = circle_coord
self.output.ax.add_patch(
mpl.patches.Circle(circle_coord, radius=radius, fill=True, color=color)
)
return self.output
def draw_line(self, x_data, y_data, color, linestyle="-", linewidth=None):
"""
Args:
x_data (list[int]): a list containing x values of all the points being drawn.
Length of list should match the length of y_data.
y_data (list[int]): a list containing y values of all the points being drawn.
Length of list should match the length of x_data.
color: color of the line. Refer to `matplotlib.colors` for a full list of
formats that are accepted.
linestyle: style of the line. Refer to `matplotlib.lines.Line2D`
for a full list of formats that are accepted.
linewidth (float or None): width of the line. When it's None,
a default value will be computed and used.
Returns:
output (VisImage): image object with line drawn.
"""
if linewidth is None:
linewidth = self._default_font_size / 3
linewidth = max(linewidth, 1)
self.output.ax.add_line(
mpl.lines.Line2D(
x_data,
y_data,
linewidth=linewidth * self.output.scale,
color=color,
linestyle=linestyle,
)
)
return self.output
def draw_binary_mask(
self, binary_mask, color=None, *, edge_color=None, text=None, alpha=0.5, area_threshold=0
):
"""
Args:
binary_mask (ndarray): numpy array of shape (H, W), where H is the image height and
W is the image width. Each value in the array is either a 0 or 1 value of uint8
type.
color: color of the mask. Refer to `matplotlib.colors` for a full list of
formats that are accepted. If None, will pick a random color.
edge_color: color of the polygon edges. Refer to `matplotlib.colors` for a
full list of formats that are accepted.
text (str): if None, will be drawn in the object's center of mass.
alpha (float): blending efficient. Smaller values lead to more transparent masks.
area_threshold (float): a connected component small than this will not be shown.
Returns:
output (VisImage): image object with mask drawn.
"""
if color is None:
color = random_color(rgb=True, maximum=1)
color = mplc.to_rgb(color)
has_valid_segment = False
binary_mask = binary_mask.astype("uint8") # opencv needs uint8
mask = GenericMask(binary_mask, self.output.height, self.output.width)
shape2d = (binary_mask.shape[0], binary_mask.shape[1])
if not mask.has_holes:
# draw polygons for regular masks
for segment in mask.polygons:
area = mask_util.area(mask_util.frPyObjects([segment], shape2d[0], shape2d[1]))
if area < (area_threshold or 0):
continue
has_valid_segment = True
segment = segment.reshape(-1, 2)
self.draw_polygon(segment, color=color, edge_color=edge_color, alpha=alpha)
else:
# TODO: Use Path/PathPatch to draw vector graphics:
# https://stackoverflow.com/questions/8919719/how-to-plot-a-complex-polygon
rgba = np.zeros(shape2d + (4,), dtype="float32")
rgba[:, :, :3] = color
rgba[:, :, 3] = (mask.mask == 1).astype("float32") * alpha
has_valid_segment = True
self.output.ax.imshow(rgba, extent=(0, self.output.width, self.output.height, 0))
if text is not None and has_valid_segment:
# TODO sometimes drawn on wrong objects. the heuristics here can improve.
lighter_color = self._change_color_brightness(color, brightness_factor=0.7)
_num_cc, cc_labels, stats, centroids = cv2.connectedComponentsWithStats(binary_mask, 8)
largest_component_id = np.argmax(stats[1:, -1]) + 1
# draw text on the largest component, as well as other very large components.
for cid in range(1, _num_cc):
if cid == largest_component_id or stats[cid, -1] > _LARGE_MASK_AREA_THRESH:
# median is more stable than centroid
# center = centroids[largest_component_id]
center = np.median((cc_labels == cid).nonzero(), axis=1)[::-1]
self.draw_text(text, center, color=lighter_color)
return self.output
def draw_polygon(self, segment, color, edge_color=None, alpha=0.5):
"""
Args:
segment: numpy array of shape Nx2, containing all the points in the polygon.
color: color of the polygon. Refer to `matplotlib.colors` for a full list of
formats that are accepted.
edge_color: color of the polygon edges. Refer to `matplotlib.colors` for a
full list of formats that are accepted. If not provided, a darker shade
of the polygon color will be used instead.
alpha (float): blending efficient. Smaller values lead to more transparent masks.
Returns:
output (VisImage): image object with polygon drawn.
"""
if edge_color is None:
# make edge color darker than the polygon color
if alpha > 0.8:
edge_color = self._change_color_brightness(color, brightness_factor=-0.7)
else:
edge_color = color
edge_color = mplc.to_rgb(edge_color) + (1,)
polygon = mpl.patches.Polygon(
segment,
fill=True,
facecolor=mplc.to_rgb(color) + (alpha,),
edgecolor=edge_color,
linewidth=max(self._default_font_size // 15 * self.output.scale, 1),
)
self.output.ax.add_patch(polygon)
return self.output
"""
Internal methods:
"""
def _jitter(self, color):
"""
Randomly modifies given color to produce a slightly different color than the color given.
Args:
color (tuple[double]): a tuple of 3 elements, containing the RGB values of the color
picked. The values in the list are in the [0.0, 1.0] range.
Returns:
jittered_color (tuple[double]): a tuple of 3 elements, containing the RGB values of the
color after being jittered. The values in the list are in the [0.0, 1.0] range.
"""
color = mplc.to_rgb(color)
vec = np.random.rand(3)
# better to do it in another color space
vec = vec / np.linalg.norm(vec) * 0.5
res = np.clip(vec + color, 0, 1)
return tuple(res)
def _create_grayscale_image(self, mask=None):
"""
Create a grayscale version of the original image.
The colors in masked area, if given, will be kept.
"""
img_bw = self.img.astype("f4").mean(axis=2)
img_bw = np.stack([img_bw] * 3, axis=2)
if mask is not None:
img_bw[mask] = self.img[mask]
return img_bw
def _change_color_brightness(self, color, brightness_factor):
"""
Depending on the brightness_factor, gives a lighter or darker color i.e. a color with
less or more saturation than the original color.
Args:
color: color of the polygon. Refer to `matplotlib.colors` for a full list of
formats that are accepted.
brightness_factor (float): a value in [-1.0, 1.0] range. A lightness factor of
0 will correspond to no change, a factor in [-1.0, 0) range will result in
a darker color and a factor in (0, 1.0] range will result in a lighter color.
Returns:
modified_color (tuple[double]): a tuple containing the RGB values of the
modified color. Each value in the tuple is in the [0.0, 1.0] range.
"""
assert brightness_factor >= -1.0 and brightness_factor <= 1.0
color = mplc.to_rgb(color)
polygon_color = colorsys.rgb_to_hls(*mplc.to_rgb(color))
modified_lightness = polygon_color[1] + (brightness_factor * polygon_color[1])
modified_lightness = 0.0 if modified_lightness < 0.0 else modified_lightness
modified_lightness = 1.0 if modified_lightness > 1.0 else modified_lightness
modified_color = colorsys.hls_to_rgb(polygon_color[0], modified_lightness, polygon_color[2])
return modified_color
def _convert_boxes(self, boxes):
"""
Convert different format of boxes to an NxB array, where B = 4 or 5 is the box dimension.
"""
if isinstance(boxes, Boxes) or isinstance(boxes, RotatedBoxes):
return boxes.tensor.detach().numpy()
else:
return np.asarray(boxes)
def _convert_masks(self, masks_or_polygons):
"""
Convert different format of masks or polygons to a tuple of masks and polygons.
Returns:
list[GenericMask]:
"""
m = masks_or_polygons
if isinstance(m, PolygonMasks):
m = m.polygons
if isinstance(m, BitMasks):
m = m.tensor.numpy()
if isinstance(m, torch.Tensor):
m = m.numpy()
ret = []
for x in m:
if isinstance(x, GenericMask):
ret.append(x)
else:
ret.append(GenericMask(x, self.output.height, self.output.width))
return ret
def _convert_keypoints(self, keypoints):
if isinstance(keypoints, Keypoints):
keypoints = keypoints.tensor
keypoints = np.asarray(keypoints)
return keypoints
def get_output(self):
"""
Returns:
output (VisImage): the image output containing the visualizations added
to the image.
"""
return self.output
magic_pdf/model/pek_sub_modules/post_process.py 0 → 100644
View file @ 1fac6aa7
import re
def layout_rm_equation(layout_res):
rm_idxs = []
for idx, ele in enumerate(layout_res['layout_dets']):
if ele['category_id'] == 10:
rm_idxs.append(idx)
for idx in rm_idxs[::-1]:
del layout_res['layout_dets'][idx]
return layout_res
def get_croped_image(image_pil, bbox):
x_min, y_min, x_max, y_max = bbox
croped_img = image_pil.crop((x_min, y_min, x_max, y_max))
return croped_img
def latex_rm_whitespace(s: str):
"""Remove unnecessary whitespace from LaTeX code.
"""
text_reg = r'(\\(operatorname|mathrm|text|mathbf)\s?\*? {.*?})'
letter = '[a-zA-Z]'
noletter = '[\W_^\d]'
names = [x[0].replace(' ', '') for x in re.findall(text_reg, s)]
s = re.sub(text_reg, lambda match: str(names.pop(0)), s)
news = s
while True:
s = news
news = re.sub(r'(?!\\ )(%s)\s+?(%s)' % (noletter, noletter), r'\1\2', s)
news = re.sub(r'(?!\\ )(%s)\s+?(%s)' % (noletter, letter), r'\1\2', news)
news = re.sub(r'(%s)\s+?(%s)' % (letter, noletter), r'\1\2', news)
if news == s:
break
return s
\ No newline at end of file
magic_pdf/model/pek_sub_modules/self_modify.py 0 → 100644
View file @ 1fac6aa7
import time
import copy
import base64
import cv2
import numpy as np
from io import BytesIO
from PIL import Image
from paddleocr import PaddleOCR
from paddleocr.ppocr.utils.logging import get_logger
from paddleocr.ppocr.utils.utility import check_and_read, alpha_to_color, binarize_img
from paddleocr.tools.infer.utility import draw_ocr_box_txt, get_rotate_crop_image, get_minarea_rect_crop
logger = get_logger()
def img_decode(content: bytes):
np_arr = np.frombuffer(content, dtype=np.uint8)
return cv2.imdecode(np_arr, cv2.IMREAD_UNCHANGED)
def check_img(img):
if isinstance(img, bytes):
img = img_decode(img)
if isinstance(img, str):
image_file = img
img, flag_gif, flag_pdf = check_and_read(image_file)
if not flag_gif and not flag_pdf:
with open(image_file, 'rb') as f:
img_str = f.read()
img = img_decode(img_str)
if img is None:
try:
buf = BytesIO()
image = BytesIO(img_str)
im = Image.open(image)
rgb = im.convert('RGB')
rgb.save(buf, 'jpeg')
buf.seek(0)
image_bytes = buf.read()
data_base64 = str(base64.b64encode(image_bytes),
encoding="utf-8")
image_decode = base64.b64decode(data_base64)
img_array = np.frombuffer(image_decode, np.uint8)
img = cv2.imdecode(img_array, cv2.IMREAD_COLOR)
except:
logger.error("error in loading image:{}".format(image_file))
return None
if img is None:
logger.error("error in loading image:{}".format(image_file))
return None
if isinstance(img, np.ndarray) and len(img.shape) == 2:
img = cv2.cvtColor(img, cv2.COLOR_GRAY2BGR)
return img
def sorted_boxes(dt_boxes):
"""
Sort text boxes in order from top to bottom, left to right
args:
dt_boxes(array):detected text boxes with shape [4, 2]
return:
sorted boxes(array) with shape [4, 2]
"""
num_boxes = dt_boxes.shape[0]
sorted_boxes = sorted(dt_boxes, key=lambda x: (x[0][1], x[0][0]))
_boxes = list(sorted_boxes)
for i in range(num_boxes - 1):
for j in range(i, -1, -1):
if abs(_boxes[j + 1][0][1] - _boxes[j][0][1]) < 10 and \
(_boxes[j + 1][0][0] < _boxes[j][0][0]):
tmp = _boxes[j]
_boxes[j] = _boxes[j + 1]
_boxes[j + 1] = tmp
else:
break
return _boxes
def formula_in_text(mf_bbox, text_bbox):
x1, y1, x2, y2 = mf_bbox
x3, y3 = text_bbox[0]
x4, y4 = text_bbox[2]
left_box, right_box = None, None
same_line = abs((y1+y2)/2 - (y3+y4)/2) / abs(y4-y3) < 0.2
if not same_line:
return False, left_box, right_box
else:
drop_origin = False
left_x = x1 - 1
right_x = x2 + 1
if x3 < x1 and x2 < x4:
drop_origin = True
left_box = np.array([text_bbox[0], [left_x, text_bbox[1][1]], [left_x, text_bbox[2][1]], text_bbox[3]]).astype('float32')
right_box = np.array([[right_x, text_bbox[0][1]], text_bbox[1], text_bbox[2], [right_x, text_bbox[3][1]]]).astype('float32')
if x3 < x1 and x1 <= x4 <= x2:
drop_origin = True
left_box = np.array([text_bbox[0], [left_x, text_bbox[1][1]], [left_x, text_bbox[2][1]], text_bbox[3]]).astype('float32')
if x1 <= x3 <= x2 and x2 < x4:
drop_origin = True
right_box = np.array([[right_x, text_bbox[0][1]], text_bbox[1], text_bbox[2], [right_x, text_bbox[3][1]]]).astype('float32')
if x1 <= x3 < x4 <= x2:
drop_origin = True
return drop_origin, left_box, right_box
def update_det_boxes(dt_boxes, mfdetrec_res):
new_dt_boxes = dt_boxes
for mf_box in mfdetrec_res:
flag, left_box, right_box = False, None, None
for idx, text_box in enumerate(new_dt_boxes):
ret, left_box, right_box = formula_in_text(mf_box['bbox'], text_box)
if ret:
new_dt_boxes.pop(idx)
if left_box is not None:
new_dt_boxes.append(left_box)
if right_box is not None:
new_dt_boxes.append(right_box)
break
return new_dt_boxes
class ModifiedPaddleOCR(PaddleOCR):
def ocr(self, img, det=True, rec=True, cls=True, bin=False, inv=False, mfd_res=None, alpha_color=(255, 255, 255)):
"""
OCR with PaddleOCR
args：
img: img for OCR, support ndarray, img_path and list or ndarray
det: use text detection or not. If False, only rec will be exec. Default is True
rec: use text recognition or not. If False, only det will be exec. Default is True
cls: use angle classifier or not. Default is True. If True, the text with rotation of 180 degrees can be recognized. If no text is rotated by 180 degrees, use cls=False to get better performance. Text with rotation of 90 or 270 degrees can be recognized even if cls=False.
bin: binarize image to black and white. Default is False.
inv: invert image colors. Default is False.
alpha_color: set RGB color Tuple for transparent parts replacement. Default is pure white.
"""
assert isinstance(img, (np.ndarray, list, str, bytes))
if isinstance(img, list) and det == True:
logger.error('When input a list of images, det must be false')
exit(0)
if cls == True and self.use_angle_cls == False:
logger.warning(
'Since the angle classifier is not initialized, it will not be used during the forward process'
)
img = check_img(img)
# for infer pdf file
if isinstance(img, list):
if self.page_num > len(img) or self.page_num == 0:
self.page_num = len(img)
imgs = img[:self.page_num]
else:
imgs = [img]
def preprocess_image(_image):
_image = alpha_to_color(_image, alpha_color)
if inv:
_image = cv2.bitwise_not(_image)
if bin:
_image = binarize_img(_image)
return _image
if det and rec:
ocr_res = []
for idx, img in enumerate(imgs):
img = preprocess_image(img)
dt_boxes, rec_res, _ = self.__call__(img, cls, mfd_res=mfd_res)
if not dt_boxes and not rec_res:
ocr_res.append(None)
continue
tmp_res = [[box.tolist(), res]
for box, res in zip(dt_boxes, rec_res)]
ocr_res.append(tmp_res)
return ocr_res
elif det and not rec:
ocr_res = []
for idx, img in enumerate(imgs):
img = preprocess_image(img)
dt_boxes, elapse = self.text_detector(img)
if not dt_boxes:
ocr_res.append(None)
continue
tmp_res = [box.tolist() for box in dt_boxes]
ocr_res.append(tmp_res)
return ocr_res
else:
ocr_res = []
cls_res = []
for idx, img in enumerate(imgs):
if not isinstance(img, list):
img = preprocess_image(img)
img = [img]
if self.use_angle_cls and cls:
img, cls_res_tmp, elapse = self.text_classifier(img)
if not rec:
cls_res.append(cls_res_tmp)
rec_res, elapse = self.text_recognizer(img)
ocr_res.append(rec_res)
if not rec:
return cls_res
return ocr_res
def __call__(self, img, cls=True, mfd_res=None):
time_dict = {'det': 0, 'rec': 0, 'cls': 0, 'all': 0}
if img is None:
logger.debug("no valid image provided")
return None, None, time_dict
start = time.time()
ori_im = img.copy()
dt_boxes, elapse = self.text_detector(img)
time_dict['det'] = elapse
if dt_boxes is None:
logger.debug("no dt_boxes found, elapsed : {}".format(elapse))
end = time.time()
time_dict['all'] = end - start
return None, None, time_dict
else:
logger.debug("dt_boxes num : {}, elapsed : {}".format(
len(dt_boxes), elapse))
img_crop_list = []
dt_boxes = sorted_boxes(dt_boxes)
if mfd_res:
bef = time.time()
dt_boxes = update_det_boxes(dt_boxes, mfd_res)
aft = time.time()
logger.debug("split text box by formula, new dt_boxes num : {}, elapsed : {}".format(
len(dt_boxes), aft-bef))
for bno in range(len(dt_boxes)):
tmp_box = copy.deepcopy(dt_boxes[bno])
if self.args.det_box_type == "quad":
img_crop = get_rotate_crop_image(ori_im, tmp_box)
else:
img_crop = get_minarea_rect_crop(ori_im, tmp_box)
img_crop_list.append(img_crop)
if self.use_angle_cls and cls:
img_crop_list, angle_list, elapse = self.text_classifier(
img_crop_list)
time_dict['cls'] = elapse
logger.debug("cls num : {}, elapsed : {}".format(
len(img_crop_list), elapse))
rec_res, elapse = self.text_recognizer(img_crop_list)
time_dict['rec'] = elapse
logger.debug("rec_res num : {}, elapsed : {}".format(
len(rec_res), elapse))
if self.args.save_crop_res:
self.draw_crop_rec_res(self.args.crop_res_save_dir, img_crop_list,
rec_res)
filter_boxes, filter_rec_res = [], []
for box, rec_result in zip(dt_boxes, rec_res):
text, score = rec_result
if score >= self.drop_score:
filter_boxes.append(box)
filter_rec_res.append(rec_result)
end = time.time()
time_dict['all'] = end - start
return filter_boxes, filter_rec_res, time_dict
\ No newline at end of file
magic_pdf/resources/model_config/UniMERNet/demo.yaml 0 → 100644
View file @ 1fac6aa7
model:
arch: unimernet
model_type: unimernet
model_config:
model_name: ./models
max_seq_len: 1024
length_aware: False
load_pretrained: True
pretrained: ./models/pytorch_model.bin
tokenizer_config:
path: ./models
datasets:
formula_rec_eval:
vis_processor:
eval:
name: "formula_image_eval"
image_size:
- 192
- 672
run:
runner: runner_iter
task: unimernet_train
batch_size_train: 64
batch_size_eval: 64
num_workers: 1
iters_per_inner_epoch: 2000
max_iters: 60000
seed: 42
output_dir: "../output/demo"
evaluate: True
test_splits: [ "eval" ]
device: "cuda"
world_size: 1
dist_url: "env://"
distributed: True
distributed_type: ddp # or fsdp when train llm
generate_cfg:
temperature: 0.0
magic_pdf/resources/model_config/layoutlmv3/layoutlmv3_base_inference.yaml 0 → 100644
View file @ 1fac6aa7
AUG:
DETR: true
CACHE_DIR: /mnt/localdata/users/yupanhuang/cache/huggingface
CUDNN_BENCHMARK: false
DATALOADER:
ASPECT_RATIO_GROUPING: true
FILTER_EMPTY_ANNOTATIONS: false
NUM_WORKERS: 4
REPEAT_THRESHOLD: 0.0
SAMPLER_TRAIN: TrainingSampler
DATASETS:
PRECOMPUTED_PROPOSAL_TOPK_TEST: 1000
PRECOMPUTED_PROPOSAL_TOPK_TRAIN: 2000
PROPOSAL_FILES_TEST: []
PROPOSAL_FILES_TRAIN: []
TEST:
- scihub_train
TRAIN:
- scihub_train
GLOBAL:
HACK: 1.0
ICDAR_DATA_DIR_TEST: ''
ICDAR_DATA_DIR_TRAIN: ''
INPUT:
CROP:
ENABLED: true
SIZE:
- 384
- 600
TYPE: absolute_range
FORMAT: RGB
MASK_FORMAT: polygon
MAX_SIZE_TEST: 1333
MAX_SIZE_TRAIN: 1333
MIN_SIZE_TEST: 800
MIN_SIZE_TRAIN:
- 480
- 512
- 544
- 576
- 608
- 640
- 672
- 704
- 736
- 768
- 800
MIN_SIZE_TRAIN_SAMPLING: choice
RANDOM_FLIP: horizontal
MODEL:
ANCHOR_GENERATOR:
ANGLES:
- - -90
- 0
- 90
ASPECT_RATIOS:
- - 0.5
- 1.0
- 2.0
NAME: DefaultAnchorGenerator
OFFSET: 0.0
SIZES:
- - 32
- - 64
- - 128
- - 256
- - 512
BACKBONE:
FREEZE_AT: 2
NAME: build_vit_fpn_backbone
CONFIG_PATH: ''
DEVICE: cpu
FPN:
FUSE_TYPE: sum
IN_FEATURES:
- layer3
- layer5
- layer7
- layer11
NORM: ''
OUT_CHANNELS: 256
IMAGE_ONLY: true
KEYPOINT_ON: false
LOAD_PROPOSALS: false
MASK_ON: true
META_ARCHITECTURE: VLGeneralizedRCNN
PANOPTIC_FPN:
COMBINE:
ENABLED: true
INSTANCES_CONFIDENCE_THRESH: 0.5
OVERLAP_THRESH: 0.5
STUFF_AREA_LIMIT: 4096
INSTANCE_LOSS_WEIGHT: 1.0
PIXEL_MEAN:
- 127.5
- 127.5
- 127.5
PIXEL_STD:
- 127.5
- 127.5
- 127.5
PROPOSAL_GENERATOR:
MIN_SIZE: 0
NAME: RPN
RESNETS:
DEFORM_MODULATED: false
DEFORM_NUM_GROUPS: 1
DEFORM_ON_PER_STAGE:
- false
- false
- false
- false
DEPTH: 50
NORM: FrozenBN
NUM_GROUPS: 1
OUT_FEATURES:
- res4
RES2_OUT_CHANNELS: 256
RES5_DILATION: 1
STEM_OUT_CHANNELS: 64
STRIDE_IN_1X1: true
WIDTH_PER_GROUP: 64
RETINANET:
BBOX_REG_LOSS_TYPE: smooth_l1
BBOX_REG_WEIGHTS:
- 1.0
- 1.0
- 1.0
- 1.0
FOCAL_LOSS_ALPHA: 0.25
FOCAL_LOSS_GAMMA: 2.0
IN_FEATURES:
- p3
- p4
- p5
- p6
- p7
IOU_LABELS:
- 0
- -1
- 1
IOU_THRESHOLDS:
- 0.4
- 0.5
NMS_THRESH_TEST: 0.5
NORM: ''
NUM_CLASSES: 10
NUM_CONVS: 4
PRIOR_PROB: 0.01
SCORE_THRESH_TEST: 0.05
SMOOTH_L1_LOSS_BETA: 0.1
TOPK_CANDIDATES_TEST: 1000
ROI_BOX_CASCADE_HEAD:
BBOX_REG_WEIGHTS:
- - 10.0
- 10.0
- 5.0
- 5.0
- - 20.0
- 20.0
- 10.0
- 10.0
- - 30.0
- 30.0
- 15.0
- 15.0
IOUS:
- 0.5
- 0.6
- 0.7
ROI_BOX_HEAD:
BBOX_REG_LOSS_TYPE: smooth_l1
BBOX_REG_LOSS_WEIGHT: 1.0
BBOX_REG_WEIGHTS:
- 10.0
- 10.0
- 5.0
- 5.0
CLS_AGNOSTIC_BBOX_REG: true
CONV_DIM: 256
FC_DIM: 1024
NAME: FastRCNNConvFCHead
NORM: ''
NUM_CONV: 0
NUM_FC: 2
POOLER_RESOLUTION: 7
POOLER_SAMPLING_RATIO: 0
POOLER_TYPE: ROIAlignV2
SMOOTH_L1_BETA: 0.0
TRAIN_ON_PRED_BOXES: false
ROI_HEADS:
BATCH_SIZE_PER_IMAGE: 512
IN_FEATURES:
- p2
- p3
- p4
- p5
IOU_LABELS:
- 0
- 1
IOU_THRESHOLDS:
- 0.5
NAME: CascadeROIHeads
NMS_THRESH_TEST: 0.5
NUM_CLASSES: 10
POSITIVE_FRACTION: 0.25
PROPOSAL_APPEND_GT: true
SCORE_THRESH_TEST: 0.05
ROI_KEYPOINT_HEAD:
CONV_DIMS:
- 512
- 512
- 512
- 512
- 512
- 512
- 512
- 512
LOSS_WEIGHT: 1.0
MIN_KEYPOINTS_PER_IMAGE: 1
NAME: KRCNNConvDeconvUpsampleHead
NORMALIZE_LOSS_BY_VISIBLE_KEYPOINTS: true
NUM_KEYPOINTS: 17
POOLER_RESOLUTION: 14
POOLER_SAMPLING_RATIO: 0
POOLER_TYPE: ROIAlignV2
ROI_MASK_HEAD:
CLS_AGNOSTIC_MASK: false
CONV_DIM: 256
NAME: MaskRCNNConvUpsampleHead
NORM: ''
NUM_CONV: 4
POOLER_RESOLUTION: 14
POOLER_SAMPLING_RATIO: 0
POOLER_TYPE: ROIAlignV2
RPN:
BATCH_SIZE_PER_IMAGE: 256
BBOX_REG_LOSS_TYPE: smooth_l1
BBOX_REG_LOSS_WEIGHT: 1.0
BBOX_REG_WEIGHTS:
- 1.0
- 1.0
- 1.0
- 1.0
BOUNDARY_THRESH: -1
CONV_DIMS:
- -1
HEAD_NAME: StandardRPNHead
IN_FEATURES:
- p2
- p3
- p4
- p5
- p6
IOU_LABELS:
- 0
- -1
- 1
IOU_THRESHOLDS:
- 0.3
- 0.7
LOSS_WEIGHT: 1.0
NMS_THRESH: 0.7
POSITIVE_FRACTION: 0.5
POST_NMS_TOPK_TEST: 1000
POST_NMS_TOPK_TRAIN: 2000
PRE_NMS_TOPK_TEST: 1000
PRE_NMS_TOPK_TRAIN: 2000
SMOOTH_L1_BETA: 0.0
SEM_SEG_HEAD:
COMMON_STRIDE: 4
CONVS_DIM: 128
IGNORE_VALUE: 255
IN_FEATURES:
- p2
- p3
- p4
- p5
LOSS_WEIGHT: 1.0
NAME: SemSegFPNHead
NORM: GN
NUM_CLASSES: 10
VIT:
DROP_PATH: 0.1
IMG_SIZE:
- 224
- 224
NAME: layoutlmv3_base
OUT_FEATURES:
- layer3
- layer5
- layer7
- layer11
POS_TYPE: abs
WEIGHTS:
OUTPUT_DIR:
SCIHUB_DATA_DIR_TRAIN: /mnt/petrelfs/share_data/zhaozhiyuan/publaynet/layout_scihub/train
SEED: 42
SOLVER:
AMP:
ENABLED: true
BACKBONE_MULTIPLIER: 1.0
BASE_LR: 0.0002
BIAS_LR_FACTOR: 1.0
CHECKPOINT_PERIOD: 2000
CLIP_GRADIENTS:
CLIP_TYPE: full_model
CLIP_VALUE: 1.0
ENABLED: true
NORM_TYPE: 2.0
GAMMA: 0.1
GRADIENT_ACCUMULATION_STEPS: 1
IMS_PER_BATCH: 32
LR_SCHEDULER_NAME: WarmupCosineLR
MAX_ITER: 20000
MOMENTUM: 0.9
NESTEROV: false
OPTIMIZER: ADAMW
REFERENCE_WORLD_SIZE: 0
STEPS:
- 10000
WARMUP_FACTOR: 0.01
WARMUP_ITERS: 333
WARMUP_METHOD: linear
WEIGHT_DECAY: 0.05
WEIGHT_DECAY_BIAS: null
WEIGHT_DECAY_NORM: 0.0
TEST:
AUG:
ENABLED: false
FLIP: true
MAX_SIZE: 4000
MIN_SIZES:
- 400
- 500
- 600
- 700
- 800
- 900
- 1000
- 1100
- 1200
DETECTIONS_PER_IMAGE: 100
EVAL_PERIOD: 1000
EXPECTED_RESULTS: []
KEYPOINT_OKS_SIGMAS: []
PRECISE_BN:
ENABLED: false
NUM_ITER: 200
VERSION: 2
VIS_PERIOD: 0
magic_pdf/resources/model_config/model_configs.yaml 0 → 100644
View file @ 1fac6aa7
config:
device: cpu
layout: True
formula: True
weights:
layout: resources/models/Layout/model_final.pth
mfd: resources/models/MFD/weights.pt
mfr: resources/models/MFR/UniMERNet
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment